RNA id: TU84138


Basic Information

Item Value
RNA id TU84138
length 537
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G62400
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6430591 ~ 6531823 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGTGGTGGAAAAATAatgacaggaagaaagaaatattcagagtctctgagtcttgatcagaatgagtaacaagatttattgagAAGCCACACGTAATGAATACAGAGTGAACTCCTGCCTTGCAAGAGGTGCCAAGCTCTCTTTATACCTTTTAGATCCTCCCATCCCTTACTTCCCAATTATGGGCACAGTGCCACCATTGTGACACGTCAACTTCTTCTGACATGTGATATGACATAATCCCTTAGTGAGCATATCAGGCTGGTTCTCAAAACATTGCAAGCAGAAAGGAAGATGACCCTGGCGCCAGAATTTGTAGAACAACTGTGACGTGCATTCcttaacacatacacatagcCAGATAGAGAAAACTCTTACTCAGCATTTCAAAAAAGCTCACTGAGGGTAGAATGGTCACAGTACACATTATCATCGCATAGaacaaaaagtaatatcattaatagtcgtcattgtttatgaatcatcacacgtcattgattatgaatcatttcaataaacaccTTCCATCACAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84119 lncRNA upstream 131956 6396286 ~ 6396553 (+) True G62386
TU84100 lncRNA upstream 163883 6364337 ~ 6364626 (+) True G62367
TU84039 lncRNA upstream 342379 6182851 ~ 6186130 (+) False G62311
TU84038 lncRNA upstream 344001 6182851 ~ 6184508 (+) True G62311
TU84035 lncRNA upstream 351004 6177224 ~ 6177505 (+) True G62309
TU84168 lncRNA downstream 133572 6665395 ~ 6673458 (+) True G62420
TU84184 lncRNA downstream 202658 6734481 ~ 6734828 (+) True G62431
TU84174 lncRNA downstream 266517 6798340 ~ 6830009 (+) True G62425
XR_002650188.1 lncRNA downstream 392355 6924178 ~ 6942785 (+) True LOC111192941
TU84234 lncRNA downstream 570457 7102280 ~ 7102659 (+) True G62471
XM_007245033.3 mRNA upstream 86935 6428006 ~ 6441574 (+) True pus7l
XM_022671272.1 mRNA upstream 102232 6409917 ~ 6426277 (+) True LOC103023466
XM_022671271.1 mRNA upstream 194169 6216811 ~ 6334340 (+) True nell2
XM_022671167.1 mRNA upstream 513395 6012846 ~ 6015114 (+) True LOC111192904
XM_015605262.2 mRNA upstream 534861 5982236 ~ 5993648 (+) False c7h12orf75
XM_007245029.2 mRNA downstream 69560 6601383 ~ 6632805 (+) True LOC103021937
XM_007245028.3 mRNA downstream 86522 6618345 ~ 6632805 (+) False LOC103021937
XM_022671276.1 mRNA downstream 163767 6695590 ~ 6703894 (+) True zcrb1
XM_007245027.3 mRNA downstream 225731 6757554 ~ 6771361 (+) True LOC103021606
XM_007245025.3 mRNA downstream 250425 6782248 ~ 6793867 (+) True LOC103047680
TU83965 other upstream 534515 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 774225 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 3224511 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 3224511 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 4593010 1921395 ~ 1935499 (+) True LOC103036328
TU84211 other downstream 319407 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 2000936 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 2001525 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 2901614 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 3114756 9646579 ~ 9650087 (+) True G63051

Expression Profile