RNA id: TU84139


Basic Information

Item Value
RNA id TU84139
length 1422
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G62400
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6430591 ~ 6531823 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atatatatattttttttttaaaaacatctgatgtCTCCTTGTTtaaaagtcagaaagagagacccAATTCACTACAGCTCGTAATAGATACAATATTAAGTTTGTCAAATTAAACCTTTCCAAAGAAAGTAAGGTCTTTTCTTACTGGTTTCTAAAATCTACTATCCTCATTAAGAGAATCAAAAGATCAGCATAGACTGAGATACATGAGAACCACTAGAGAAATTAGAtatgtgtattctttaaatctcATTCAGCTGAGACTGAGCTGAAATCAGTctcaataaaaaagaataataatagaaaaggcCTAAACCACATGAAGACAGAAGCTGTGTTCAGAAtggctcactcattaactctttcactatgtagcattttctatttactAAACGAATTATGGAACAACCAAACAataaaccatgtttgtcctgctctgaggacgTCTAATACAACAGCACTGCATTGcattatagtatattttggaatttctaAATTTTGTGATGCATTAGGTTTTTCATAGTGAACTATATAGGGAACAGAATGTACTGCTGTGGTTTTAAACAGTATTGCAAAAATGGTTTTacactatatagtgcactatttctgGAATAGGGAGCGATTctgacacagccacacacacattatattcaTCATTAGATTCGCTTACAGAATATCAGAGTTAGACAAATGTTagaaacatacacacttacacacacgcacagacacacacacacacacacacacaccaaatgtgATAGAAGATAGCAGAGAAGAGATgttttgtctatctctctcactgctttatTCAACAcacgcagaaacacacacacacacattgtatcaAAAGCCTGGAATCCTCATCTCTTTTCTGTTTCAATCAGGGATGACTTTCACAATGTGGACATTTGTACATAACTCATCACTACTATTTAAACATGAAGCAGTCTCACATATTCACTAAACTGCcatcctcagaattctacagcATTTTCCATAAAGATAATGAAACATGTTACATTGAACAGTTCCAGCATGGCTCAATATTCTGCCctactttaatatatgtatattgggTTAATATGCTAATGATTCCAAACCTTTGAACAacactacataaacacacacacacacagacatacacatatAGTCTTGGCTCATTTGATTGAAAAGAGCTGCGTCATGAATTTTTGGATTAAATTTCAATTCTTTAGTTACTTGGGATCCCATTTTTGTTCTCTCATTCGATTTTAATGACTCAGAGTAATTTAGCCCCAATAATCACGTCTCACCTTCCTTCTTCTATCCCTGCTTAATACACAATCAGTACCCTGTactattatagtattatttatGCACTCCTCCCCACGGTCCCGGGACCTATACTCTAATGACACGTCTATCAATAGAGGCCTCACGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84119 lncRNA upstream 34038 6396286 ~ 6396553 (+) True G62386
TU84100 lncRNA upstream 65965 6364337 ~ 6364626 (+) True G62367
TU84039 lncRNA upstream 244461 6182851 ~ 6186130 (+) False G62311
TU84038 lncRNA upstream 246083 6182851 ~ 6184508 (+) True G62311
TU84035 lncRNA upstream 253086 6177224 ~ 6177505 (+) True G62309
TU84168 lncRNA downstream 134516 6665395 ~ 6673458 (+) True G62420
TU84184 lncRNA downstream 203602 6734481 ~ 6734828 (+) True G62431
TU84174 lncRNA downstream 267461 6798340 ~ 6830009 (+) True G62425
XR_002650188.1 lncRNA downstream 393299 6924178 ~ 6942785 (+) True LOC111192941
TU84234 lncRNA downstream 571401 7102280 ~ 7102659 (+) True G62471
XM_022671272.1 mRNA upstream 4314 6409917 ~ 6426277 (+) True LOC103023466
XM_022671271.1 mRNA upstream 96251 6216811 ~ 6334340 (+) True nell2
XM_022671167.1 mRNA upstream 415477 6012846 ~ 6015114 (+) True LOC111192904
XM_022671149.1 mRNA upstream 436943 5982236 ~ 5993648 (+) False c7h12orf75
XM_015605262.2 mRNA upstream 436943 5982236 ~ 5993648 (+) False c7h12orf75
XM_007245029.2 mRNA downstream 70504 6601383 ~ 6632805 (+) True LOC103021937
XM_007245028.3 mRNA downstream 87466 6618345 ~ 6632805 (+) False LOC103021937
XM_022671276.1 mRNA downstream 164711 6695590 ~ 6703894 (+) True zcrb1
XM_007245027.3 mRNA downstream 226675 6757554 ~ 6771361 (+) True LOC103021606
XM_007245025.3 mRNA downstream 251369 6782248 ~ 6793867 (+) True LOC103047680
TU83965 other upstream 436597 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 676307 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 3126593 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 3126593 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 4495092 1921395 ~ 1935499 (+) True LOC103036328
TU84211 other downstream 320351 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 2001880 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 2002469 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 2902558 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 3115700 9646579 ~ 9650087 (+) True G63051

Expression Profile