RNA id: TU84157


Basic Information

Item Value
RNA id TU84157
length 1835
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G62409
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6440953 ~ 6444237 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcttaagaaaaaaataatataaaacttaatttataGTTTCATtcacaatgattttttttaaacttgtgtCAGGCTGTCTGCATGTAGTCTGCAATAGTTTGACAAGAGGAATACTATTTTTATGTACAAACAGAAGGTCTAATActgatttgttaaaaaaatatatacagatacaTTTAACAGACAATCTCTCAGCCTAAACGgcaaaaatgtgtttagttcATGCTTTACTGTTATTACCATATTACAGCTTTCATTCCTTAcaggtaactttttttttgcaggaatctgtaaaaaaaaaaaaaaaacttttccacATCTCCAATGTTAAAACTTGTGACTTGAAGTGTGAGAAGCAGAAAATGATTCAACTACTAAAAATTGGAGCATATTTTGCTTCTCACCATACAAACAATCCCAAAATGACATTCAGTGACAACTCTGAAATGGGATTGCCAGTTTCTTGTTCAGAAATCATCAGCATATTCAGTtgctttgatttgatttaatgtttttctgtgtgtccTTTAGATCAGCTCTGCAACGTTGAAATAGAAGAAAGGACAAAAACAACTGTGTTTATTTTGGaattcttttctttgcatttgctTGTGCTAAAGGATCATCTTATGAATATTTGCTGCTCACaaataagttttggaaaaaaatgtctTACATTTGCACAGTTCTGTATTAGAAATAATGAATACTTTGCctcaatcccattttaccccttggccctactatttacccctacccctctgttttgcacgtGCACGCCAAGGTGTTTGTTAGCCCtttatacggagatttttctgaggcacacttcaaaccaagtatgagaatcactggtaagatagcagaacaagcaaccaaagaaacacattaatgtaggtattttccttgttaaaagtgacgatGAGCACTATATTACCAGATATTTTAATgagtagtttcaatgttttattggctatattcttcataacaagcttaAAAAAGATTGCTaatagtttgtctcagtagctagctggctagctaacttttccattccaccttaaatggcatAAAAGActgcaggggctgcagcatttaaggcagagtgaaaacattaaataaaataaaagctaaccAACGCTTATTTCAGCTTTTCTTTACAGAGGAATTAAGTAATGGACAATAATAACTAATTTCTGCCCCAtttcccccctttctgaagatatATGATGCCCTAacgttaactagttaaccagcagctaggttattGAACTCTAGCACTCCTGATGTCATGTCAGTGGTTAAAGGGTCATCCATTTCCACCCCTTTCTTCTTGTATTCTAAAGGcttacactcgaaaagaaggggttagttaggggtaagtggtaaggccaaggggtgaaatgggattgggcctttgtATTACTTTTGAATCAAGTTCATGTAATCCAACCATCCCATCTAGTGGCCACTTGATGAAATGACATGAAATTAAAGCAAAATGAAACCACTGACATTTACAAATCACACTTCATAATTTCCCTGAGACAGACTGTGGCGTAGCAGGAAGAATCAAGATCAAAAGACAGTTTTAAGGCAGTTGTGGAGGGAGGGGGTGACGGCTCTGTGAATGATTCTTCTTCAGTAGTCTGTAGGCTGTAGGTGATGTTATGAGGATAAGCCAGTAAGGGCCGGTAGCAGCCAGGCACGTTGAGTTTGAGTGAGGTGATTCTGAATCTGCAGGAACCCAGACCGTCCTGTGATAGCCGGTCCTGATACCATTTACCAAGTACATTCTCTGGATATTTTACAGTGTTGCCGGGCATGGGGAGGACCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84113 lncRNA downstream 62539 6377947 ~ 6378414 (-) True G62380
TU84108 lncRNA downstream 66759 6373695 ~ 6374194 (-) True G62375
TU84096 lncRNA downstream 77073 6358661 ~ 6363880 (-) True G62363
TU84093 lncRNA downstream 85848 6354803 ~ 6355105 (-) True G62361
TU84086 lncRNA downstream 105182 6335523 ~ 6335771 (-) True G62354
TU84160 lncRNA upstream 117835 6562072 ~ 6562297 (-) True G62412
TU84261 lncRNA upstream 251421 6695658 ~ 6698614 (-) True G62486
TU84267 lncRNA upstream 267826 6712063 ~ 6712880 (-) True G62492
TU84282 lncRNA upstream 283637 6727874 ~ 6729002 (-) False LOC111192938
XR_002650187.1 lncRNA upstream 292346 6736583 ~ 6738038 (-) True LOC111192939
XM_007229721.2 mRNA downstream 296745 6139962 ~ 6144208 (-) True LOC103029290
XM_007229722.3 mRNA downstream 321187 6096340 ~ 6119766 (-) True nuak1
XM_022671263.1 mRNA downstream 714674 5667055 ~ 5726279 (-) False abcc9
XM_022671275.1 mRNA upstream 188773 6633010 ~ 6695389 (-) True pphln1
XM_022671274.1 mRNA upstream 188773 6633010 ~ 6695384 (-) False pphln1
XM_022671273.1 mRNA upstream 188773 6633010 ~ 6695384 (-) False pphln1
XM_022671278.1 mRNA upstream 284512 6728749 ~ 6733125 (-) True LOC111192938
XM_022671168.1 mRNA upstream 290920 6735157 ~ 6736574 (-) True LOC111192905
TU84110 other downstream 65973 6374469 ~ 6374980 (-) True G62377
TU83573 other downstream 1818376 4622213 ~ 4622577 (-) True G61942
XR_002650185.1 other downstream 2058902 4342917 ~ 4382051 (-) False LOC103039416
XR_455047.3 other downstream 2058903 4335118 ~ 4382050 (-) True LOC103039416
TU83243 other downstream 2782685 3651966 ~ 3658268 (-) False G61676
XR_002650186.1 other upstream 188773 6633010 ~ 6695384 (-) False pphln1
TU84255 other upstream 227373 6671610 ~ 6737948 (-) False G62484
XR_002650150.1 other upstream 277865 6722102 ~ 6723530 (-) True LOC111192868
TU84254 other upstream 290926 6735163 ~ 6737948 (-) True G62484
TU84600 other upstream 1722441 8166678 ~ 8173802 (-) False LOC111192870

Expression Profile