RNA id: TU84168


Basic Information

Item Value
RNA id TU84168
length 239
lncRNA type inter_gene
GC content 0.61
exon number 2
gene id G62420
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6665395 ~ 6673458 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGACACAGAGCTGTGAGGTGATCCATCTCGGGATGCGCTCACCAAGGGCCCTGGGGCTCTGTCCCGGTCTTTTTCCCTGAAGAGGCTGATACGGGTGGGTCTTGCTCCTGTCTGGGGAATAGcttcggctgctgatgctggATCCAGAGCGCGGGGAAGGGGGAACATCCCGACGGACAGGGGAACGCTCCCGCACTGGTGGAAAAGGTGGTTTACGGCGCATACCTTCCCTTTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84143 lncRNA upstream 133572 6474432 ~ 6531823 (+) True G62400
TU84138 lncRNA upstream 133572 6528509 ~ 6531823 (+) False G62400
TU84139 lncRNA upstream 134516 6430591 ~ 6530879 (+) False G62400
TU84119 lncRNA upstream 268842 6396286 ~ 6396553 (+) True G62386
TU84100 lncRNA upstream 300769 6364337 ~ 6364626 (+) True G62367
TU84184 lncRNA downstream 61023 6734481 ~ 6734828 (+) True G62431
TU84174 lncRNA downstream 124882 6798340 ~ 6830009 (+) True G62425
XR_002650188.1 lncRNA downstream 250720 6924178 ~ 6942785 (+) True LOC111192941
TU84234 lncRNA downstream 428822 7102280 ~ 7102659 (+) True G62471
TU84371 lncRNA downstream 521318 7194776 ~ 7194982 (+) True G62576
XM_007245029.2 mRNA upstream 32590 6601383 ~ 6632805 (+) True LOC103021937
XM_007245028.3 mRNA upstream 32590 6618345 ~ 6632805 (+) False LOC103021937
XM_007245033.3 mRNA upstream 223821 6428006 ~ 6441574 (+) True pus7l
XM_022671272.1 mRNA upstream 239118 6409917 ~ 6426277 (+) True LOC103023466
XM_022671271.1 mRNA upstream 331055 6216811 ~ 6334340 (+) True nell2
XM_022671276.1 mRNA downstream 22132 6695590 ~ 6703894 (+) True zcrb1
XM_007245027.3 mRNA downstream 84096 6757554 ~ 6771361 (+) True LOC103021606
XM_007245025.3 mRNA downstream 108790 6782248 ~ 6793867 (+) True LOC103047680
XM_022671286.1 mRNA downstream 279558 6953016 ~ 7094083 (+) True foxp2
XM_007252716.3 mRNA downstream 466393 7139851 ~ 7170640 (+) True mdfic
TU83965 other upstream 671401 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 911111 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 3361397 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 3361397 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 4729896 1921395 ~ 1935499 (+) True LOC103036328
TU84211 other downstream 177772 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 1859301 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 1859890 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 2759979 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 2973121 9646579 ~ 9650087 (+) True G63051

Expression Profile