RNA id: TU84174


Basic Information

Item Value
RNA id TU84174
length 337
lncRNA type inter_gene
GC content 0.11
exon number 2
gene id G62425
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6798340 ~ 6830009 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttttttcttgtcctcACCTCTCATTCTCAGCACCGGGTCCAGACGCATGTTGCATTGTGTTTATATGAAAATCCATAACATTTgccaagtttaaaaaaaaaaaaaaaaaaaaaaaaaaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacataaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84184 lncRNA upstream 63512 6734481 ~ 6734828 (+) True G62431
TU84168 lncRNA upstream 124882 6665395 ~ 6673458 (+) True G62420
TU84143 lncRNA upstream 266517 6474432 ~ 6531823 (+) True G62400
TU84138 lncRNA upstream 266517 6528509 ~ 6531823 (+) False G62400
TU84139 lncRNA upstream 267461 6430591 ~ 6530879 (+) False G62400
XR_002650188.1 lncRNA downstream 94169 6924178 ~ 6942785 (+) True LOC111192941
TU84234 lncRNA downstream 272271 7102280 ~ 7102659 (+) True G62471
TU84371 lncRNA downstream 364767 7194776 ~ 7194982 (+) True G62576
TU84374 lncRNA downstream 388474 7218483 ~ 7218703 (+) True G62579
TU84376 lncRNA downstream 404115 7234124 ~ 7234439 (+) True G62581
XM_007245025.3 mRNA upstream 4473 6782248 ~ 6793867 (+) True LOC103047680
XM_007245027.3 mRNA upstream 26979 6757554 ~ 6771361 (+) True LOC103021606
XM_022671276.1 mRNA upstream 94446 6695590 ~ 6703894 (+) True zcrb1
XM_007245029.2 mRNA upstream 165535 6601383 ~ 6632805 (+) True LOC103021937
XM_007245028.3 mRNA upstream 165535 6618345 ~ 6632805 (+) False LOC103021937
XM_022671286.1 mRNA downstream 123007 6953016 ~ 7094083 (+) True foxp2
XM_007252716.3 mRNA downstream 309842 7139851 ~ 7170640 (+) True mdfic
XM_007252717.3 mRNA downstream 309842 7139851 ~ 7170640 (+) False mdfic
XM_007252723.3 mRNA downstream 719076 7549085 ~ 7553250 (+) True arl1
XM_007252735.3 mRNA downstream 773892 7603901 ~ 7612947 (+) True slc5a8
TU83965 other upstream 804346 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 1044056 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 3494342 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 3494342 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 4862841 1921395 ~ 1935499 (+) True LOC103036328
TU84211 other downstream 21221 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 1702750 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 1703339 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 2603428 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 2816570 9646579 ~ 9650087 (+) True G63051

Expression Profile