RNA id: TU84407


Basic Information

Item Value
RNA id TU84407
length 362
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G62608
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 7420400 ~ 7475193 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTCATGTCCTGTCTGTTCTCTTGTCTGTATGTTCTCATGTGACccggctcctctgtgtttcattcccagtgtttttccactcacctgtgttcatttgtagctccgccccttcgtcccaggtgtttcctgtttcctgtgtgtgtgcacctctatttaaggtccgtgttccatttccccggtgtcgatccttgtacgtttatcgtctgtcagtgctctatgtgttccccagtttcctcagtcctgttttcagtttattccatgtgtattttgtatttgttttctttaataaatccctttttgtttgcatttgcgtccgcctccgcgtcctccctgcaccctcACCTGACAGTACCATTCctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84403 lncRNA upstream 17089 7403091 ~ 7403311 (+) True G62604
TU84401 lncRNA upstream 25904 7393703 ~ 7394496 (+) True G62602
TU84376 lncRNA upstream 185961 7234124 ~ 7234439 (+) True G62581
TU84374 lncRNA upstream 201697 7218483 ~ 7218703 (+) True G62579
TU84371 lncRNA upstream 225418 7194776 ~ 7194982 (+) True G62576
TU84423 lncRNA downstream 70195 7545388 ~ 7545710 (+) True G62623
TU84431 lncRNA downstream 81578 7556771 ~ 7558810 (+) True G62628
TU84453 lncRNA downstream 123373 7598566 ~ 7602267 (+) True G62644
TU84477 lncRNA downstream 142350 7617543 ~ 7619396 (+) True G62656
TU84523 lncRNA downstream 295549 7770742 ~ 7786868 (+) True G62685
XM_007252716.3 mRNA upstream 249760 7139851 ~ 7170640 (+) True mdfic
XM_007252717.3 mRNA upstream 249760 7139851 ~ 7170640 (+) False mdfic
XM_022671286.1 mRNA upstream 326317 6953016 ~ 7094083 (+) True foxp2
XM_007245025.3 mRNA upstream 626533 6782248 ~ 6793867 (+) True LOC103047680
XM_007245027.3 mRNA upstream 649039 6757554 ~ 6771361 (+) True LOC103021606
XM_007252723.3 mRNA downstream 73892 7549085 ~ 7553250 (+) True arl1
XM_007252735.3 mRNA downstream 128708 7603901 ~ 7612947 (+) True slc5a8
XM_007252724.3 mRNA downstream 145621 7620814 ~ 7631378 (+) True tmem209
XM_007252726.3 mRNA downstream 158200 7633393 ~ 7687547 (+) True ahcyl2
XM_007252727.3 mRNA downstream 158200 7633393 ~ 7686004 (+) False ahcyl2
TU84211 other upstream 564638 6851230 ~ 6855762 (+) True G62455
TU83965 other upstream 1426406 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 1666116 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 4116402 3296546 ~ 3303998 (+) True G61575
TU84764 other downstream 1057566 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 1058155 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 1958244 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 2171386 9646579 ~ 9650087 (+) True G63051
TU85565 other downstream 4992857 12468050 ~ 12468902 (+) True G63432

Expression Profile