RNA id: TU84523


Basic Information

Item Value
RNA id TU84523
length 1238
lncRNA type inter_gene
GC content 0.45
exon number 8
gene id G62685
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 7770742 ~ 7786868 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATAGAACGTATTAGATCACTTTATTAGGTATTTAAACCATTATCCATCAACAGTGCAGTACTGATATATATGGggataatatttattaaaatcataaatcTCTTAAAATAAAGCGTTATAAAATGTGTACAAGAgcttatttatacatatattccAAAAGAACAAGAAAGCAAGGCCATTTTGCTGTGGTGAAAAGCACCCAACGCCAATTCAGTACTCAGTCAGCTCATGAACGGCCTGCAATACATTTTCAGTTTAAGAGGCTGTTGCCTGCCAGAATCAGAAAACACAGTAACATTTTAAGGGGTGCTGAAGCGGTGGTCACTGGCGATGAACACATGACCCTAGCTTGAAAGTTTTAAAATTCAACAGACAGGAAGCGGCGATAGGGAGGCGTCTGGAGGCTCTTTACACAATATCGCGGGTTCGTTTGATGGCGCAGCACAGCAGCATGCTGAAGATCATGCCAAAGATCATGATCACACCAATACCAATTCCAACACCTCCAATAATGTGCAGCTTGGAGTTGAACAGGTCGTCTATGGCAGCTGGGCAACTCGTTGTGATCAGAACCTGCAGTCCCTCCTTTTTCGGGCAGGTGTCTTGGGCAGCATTAAACACAGTTCCAGTGATACCACAGCATTGAAGGCTGAACTGGATGGCTCGCAGTGTCTCCTTCAGCGCGTCCTGCTTCGTCGTTTCATAGTTATTGTAGGTCTCTTTGTAGAAACTCTTCAGCTCGTCCACAATCTTATCTTTATTGGACAGTCCCCATATCCCAGCAGCCACCTCTGCTGCAAATATgagaagcaggaaaaaaaagaaCAATCCCAGCATGAACGGGGACTCTCGGATTGCTCCACAGCAGCCAAGGAAGCCAACCACCATCATCAGGGCCCCGGCCACAATCAGGATGTAAACCCCTGTGTAGAAGGCAGTGGGAGAGTCCTGGGCTTGGAAAAGGCCTTCAGTCCTCTTGTCGAAGCGCAGCCAGAGTGCAACCGCCAGGACACCTGTACCTGCCAGcCAAAACAGGAAATTGAAGGCAAACATCAGGTACTTGATGCAGCTAACACCACCTCCAACTACTCCCATGATTAAGCTTTTACAGAGTTTTACAGAGATTACAGCTCAAGAgaagaaatgttaaattaaagcaCACAGGTTAAAGGTGTGTAACTGGCTCTAGCAACAAAGTGCTGCTGGTCTTCCCTTcctaaagagagtgagagagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84477 lncRNA upstream 151346 7617543 ~ 7619396 (+) True G62656
TU84453 lncRNA upstream 168475 7598566 ~ 7602267 (+) True G62644
TU84431 lncRNA upstream 211932 7556771 ~ 7558810 (+) True G62628
TU84423 lncRNA upstream 225032 7545388 ~ 7545710 (+) True G62623
TU84407 lncRNA upstream 295549 7420400 ~ 7475193 (+) True G62608
TU84550 lncRNA downstream 162970 7949838 ~ 7951452 (+) True G62710
XR_001518662.2 lncRNA downstream 583895 8370763 ~ 8374695 (+) True LOC107197604
TU84651 lncRNA downstream 617819 8404687 ~ 8415039 (+) False rab19
TU84678 lncRNA downstream 646868 8433736 ~ 8434382 (+) True G62807
TU84681 lncRNA downstream 664624 8451492 ~ 8455911 (+) True G62810
XM_015606733.2 mRNA upstream 499 7766846 ~ 7770243 (+) True smkr1
XM_022671169.1 mRNA upstream 7619 7703112 ~ 7763123 (+) True LOC103023836
XM_007252726.3 mRNA upstream 83195 7633393 ~ 7687547 (+) True ahcyl2
XM_022671289.1 mRNA upstream 83195 7661433 ~ 7687547 (+) False ahcyl2
XM_007252727.3 mRNA upstream 84738 7633393 ~ 7686004 (+) False ahcyl2
XM_022671293.1 mRNA downstream 33487 7820355 ~ 7921224 (+) True LOC103021322
XM_022671291.1 mRNA downstream 33487 7820355 ~ 7921224 (+) False LOC103021322
XM_022671292.1 mRNA downstream 33487 7820355 ~ 7921224 (+) False LOC103021322
XM_007252732.3 mRNA downstream 39373 7826241 ~ 7921224 (+) False LOC103021322
XM_007229829.3 mRNA downstream 614972 8401840 ~ 8415039 (+) True rab19
TU84211 other upstream 914980 6851230 ~ 6855762 (+) True G62455
TU83965 other upstream 1776748 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 2016458 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 4466744 3296546 ~ 3303998 (+) True G61575
TU84764 other downstream 745891 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 746480 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 1646569 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 1859711 9646579 ~ 9650087 (+) True G63051
TU85565 other downstream 4681182 12468050 ~ 12468902 (+) True G63432

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000066_01713419_01715550.mRNA True 761 mRNA 0.44 5 CI01000066 1713419 ~ 1715886 (+)