RNA id: TU84550


Basic Information

Item Value
RNA id TU84550
length 1615
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G62710
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 7949838 ~ 7951452 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCTTGCGGTAACAGGAGGAGGGTGACATTGTGTTTAAGTGGTCGGCCGTTTCACTCACAACACTCCTTCAAGTATCAGAAAGCAAAATtgatattcaaaaaaaaaaaactgactcttaataaacaaagcaaactgagaaaaaaggACCAAACATATGAATGGGACACCAGGTGAATAAGAGATCGGATCTGTTGGCAAAAAGAAACTAACTTTACTACACAAGGAGAAACATCCAACATACAAGTCGTTTATTTTCTTACTAAAATAGAGATCTGTTTCTGTCACAGTTTACTCAGTCTCGACATACCCAGAGAGAATATTTGGGACATCAGGGGGATAAAGTGTGTGGTCCTTGAATACAGTATTGTTTGGCAcaactttcctttttttttgaaaactgGAAGTGTTCAGTATCAGCAACAGAGAGCATATAGAATACATGTCCTTGGGTTTCAGCCATTCCCAATGGGGGGATTTGAGGTCCTTGATCAGAATGATGGTggtggtcttttatttatttaaaaaagcagcaaagaattgtatacatatacagtatgcaCAGTAACACCAGCAGGGGCTTTACacacagaacaaaaaaacaacatgtgGGAATGTTTCCTTGAATTAATCACAATCCAAACATGAGCAAAGTCAAGGGTATATGAAGGGTCTGAACGGATTTCCAGACTCCAGTGCTTGATGTAGGGCTCctttttgcgttttttttttttttttttttacgggaAAAGGCAATGTGTTGGAAATAGTGTGTAGGCTCATGATTCTCACAATCATCTAACGGAAATGAGAGCAACGTGAGTTCATCTGTGAGGTGTAGTCTCCTCCTACAGCTCCAGATAGAGATGGAGGAGGCTTCCCAGTGgaatattgaataaaacagTGAAGGGAATGTACGTATCCTGTCTGGAGGTCCACGGTTCTGGTTTAAATCTTGAAGCTGACATTTTAGGTGAActcttaataaaacaaaaaactcacACCCCGAAAGCATTCACTCAAAGCAAAGACAGTCTGTCAGTCATGATATACACACTGGCCAAGATAGACCATCAGATAAAAGTTCTATTAGCAATCTTTATGTCTTCAAATGCACCATTACATCTCCTACAGTGCATTAAAGCAACTTTGGATATTTAACTTTGGATTGTAAAGCTTAACACGCCATGCTTCCCTCCGAAGGAAGCAGCATCTGTCTCGATTCACTCCCTGATGTATCAGTCTCTGATCGTTTTATTCACTTCATCACAGCACTCCCAAATAGCTTCCTATTCTAATGTCCTTCCCATTTCACTTATCTCGCAAGCAGCAGATCAATGGACATACAGTAGTTTGACTAGAACTTGTTAGATGTTTATCCTGTATCCATTTCTCTCTGTTAAACTTAAAAGCTCAAGAGATGAGAGGAAATGATAGCGGTTCCAGGGTTTATAAGAGGTTGTGGGGATGTTACAGCAGATGGAACAGTGATAAAGGTGTAAAAAGAGATCTTTGCACAGTGCCATAgcagaaccacttttggttccattAAGAAGAACACAACACTTAAACAGGCACATAATAAGTGTAACCCTCTGGGGTCCATGAACTCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84523 lncRNA upstream 162970 7770742 ~ 7786868 (+) True G62685
TU84477 lncRNA upstream 330442 7617543 ~ 7619396 (+) True G62656
TU84453 lncRNA upstream 347571 7598566 ~ 7602267 (+) True G62644
TU84431 lncRNA upstream 391028 7556771 ~ 7558810 (+) True G62628
TU84423 lncRNA upstream 404128 7545388 ~ 7545710 (+) True G62623
XR_001518662.2 lncRNA downstream 419311 8370763 ~ 8374695 (+) True LOC107197604
TU84651 lncRNA downstream 453235 8404687 ~ 8415039 (+) False rab19
TU84678 lncRNA downstream 482284 8433736 ~ 8434382 (+) True G62807
TU84681 lncRNA downstream 500040 8451492 ~ 8455911 (+) True G62810
TU84671 lncRNA downstream 512675 8464127 ~ 8496289 (+) True G62805
XM_022671293.1 mRNA upstream 28614 7820355 ~ 7921224 (+) True LOC103021322
XM_022671291.1 mRNA upstream 28614 7820355 ~ 7921224 (+) False LOC103021322
XM_022671292.1 mRNA upstream 28614 7820355 ~ 7921224 (+) False LOC103021322
XM_007252732.3 mRNA upstream 28614 7826241 ~ 7921224 (+) False LOC103021322
XM_015606733.2 mRNA upstream 179595 7766846 ~ 7770243 (+) True smkr1
XM_007229829.3 mRNA downstream 450388 8401840 ~ 8415039 (+) True rab19
XM_007229832.3 mRNA downstream 477100 8428552 ~ 8431990 (+) True ckap4
XM_015605601.2 mRNA downstream 559063 8510515 ~ 8516534 (+) True LOC107197608
XM_015605602.2 mRNA downstream 566528 8517980 ~ 8525037 (+) True LOC103044524
XM_022671304.1 mRNA downstream 574766 8526218 ~ 8536561 (+) False LOC103041471
TU84211 other upstream 1094076 6851230 ~ 6855762 (+) True G62455
TU83965 other upstream 1955844 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 2195554 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 4645840 3296546 ~ 3303998 (+) True G61575
TU84764 other downstream 581307 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 581896 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 1481985 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 1695127 9646579 ~ 9650087 (+) True G63051
TU85565 other downstream 4516598 12468050 ~ 12468902 (+) True G63432

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU336869 True 2896 lncRNA 0.38 1 NC_047612.1 17895335 ~ 17898230 (-)