RNA id: TU84671


Basic Information

Item Value
RNA id TU84671
length 4533
lncRNA type inter_gene
GC content 0.40
exon number 11
gene id G62805
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 8464127 ~ 8496289 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGATGAAATCTTTTTATTTGCCAACTGCAGAGTGACAAACTGAACAAAGTGCACTGCGTGAGCACAGCTGCTgcaataatgtaacaaaataaaagtcaaagttaaTAGATGTGCCAGTTACAGCAAAACTCTGGTACAATTAAAGGTTTGCTTTTGTCCCCCCTGAGATGGCATTAACAATATAACTGCCATCAGTGAATGTGAACAGGCCGTGATGAGTTAACCACCGGCAAACTCTGAAAGAAGagaattaagaaaaaacaatgTGTCCTACGGTGTACTGATAGTTGTGTGCCTAAATAATAACTATATGACCATCTGCAAGAAAGAACTACAATTCATATatacaaatgtaacaaaaacaataaattcaTGACATTCATACGCCACATAAATGCTCAATCACTATACATTCTGGTTCTCAATCAGCATAAATCACAGCATTTGTCCATGGGCAAAGGGTGAAGCATTTAAggcattttgttttataaattaacagTCTGAATTCTAAAACTGCAGCACTCATCACCATCACctcatttatgtatttattaattatctgAATGCCTATTTTGTTCTTATGTTAACTGCAAGATACACGCACAAAGGCTGAAGACtggcatctgtttttttgtacTAAAAAGTGTATGAATTCGCCCTCCCATGTGGATTATGTGAACTGTCCAGTGCAGACTAAAGAATAAAGCTAACTTCAAGTGAAATACACCTCAACCCCCTCAAAAAAACTAtttgaaaacattaaaatttgAATCAAAGTGAAGGCCAGCTCAAACCAATACTACACTGTGTGAAACGATACAACTTGACTAGCGATAATTTACAAATGACACACTCTTATAAACAAAGGTTCCAAACTTGGTTCTTCACAAGGGAaacaaatatacttattttatgGCACTGTTCTTTGAGGCTTTCTAGAACCTTTGATTTTAAGAGTAAAACTAAATGTGGCACCATTAGGATCACctacaaaaacacataaaaagggGAGGAAAGAAATGTAAATAAGGGCTACAAAAGGCTCTTTGAGTGAGATCATAACAAACCCTTTTGGTTCCATCAAGAATCTTTTTGGAAAACAGAAGAACCCTTCAATAGGATTTAACCCATGTATAAAgtcaatataaatgtttttgaacCAAGCTTAATGTTTTGTAAAAGtgattttacacactttttaaaaacgGTTCTTTATGAATTAAAAGTTATTTGTATACGGCATTGCACAAAGAAAGCTTTGTAGGTATATGGCAATTTCCTCAGCCATCAGCTAATCCCTGATAACCAGTATGGGCCTTCTGTCATTATTGATTCTTGTTAAGATCAAGAATAAGTTAAGAATCAAGaataactatttaaaataattttccatTCATCCACACGAGTTAAAATCATAAAACCTAAaatttggaaaataaaatctccttAGTTCCTGATTACCATCAGTGGAAGTCTTAGTTATAAGATTGtgattttgcatatttttatattactgtTAATGGGTGTAGCATAGGAGAAATtactacactcttaaaaataaaataaagggtCTTTGAATGGTTCTTTGAGGAATGTTATACAACAGAGTTATTTGAAACCAGATTTGAATTCAGTCCTGGACTTGGTAATCCTTAGTAGGTCAACTAATTTGCTTAAGTTGTTCTATTACATTCCAGTCCTGTATTTTGTTCTCGAAAATGGATTTTGTATTTATGGTCCACATTTGAAGACCTGGTTCACAGAAGCACTAGTTTTGgttggataaaaaaataaaatcacaattacAGATAGGGATGTACAATACTGACAAAAACACTGTTGGTTATGTCGTTATCGACATTACGTGCAATAAATAAAGATACTAAATTAGTTTAAAGTCTTCAAAAGGTTGGCAGCACTAATTTCCCAGGATTAGAAGTAGTTTGGTATGCGCATTCACTGTAGATCTCTACCTTCCTACAGCTCCAATCTCATTAGGTCACATGAgcagtctgcagtgtgaagagcTCCCCCTGTAGCTGTACTAAGGTAATGCAGGTACATTTGAGCTGGCaacaatttacaatattttctcAGCTGTCATATTTTATCGTAAGAAAATGTATACAgcgaaaatgacaaaaatatgatCTTACAGCCCTAATTATAGAGATAATTAAGTGTGAAGAACCATTTAAAAGTTGAATGACCTTTTTAAAAGGGTCTGCACGCCTCACACCTCTTTTACAACCATAGTTCTTAATGAATTGTTCTTTTataagtggttcttctatgacATCACTCAGAGAACTATTTGAAGCAACTTTACTTTTAAGAGCATGGAATAATAATCCCACCATACGGCCATATGGCCACACTCAATTCGCATCTCAATTCTGCATGGAAACACAGCAGACTCTCATAGCCTTAAGCGATACAATTGCAGCAATGAAATCCTTAAATGCAAAAGTTTCTAAATATGCAAAATACTTTCTAAATTGTTAAATATAGAATTTGAAGAATTAATTTCCACCTTTTCCCTAAATCCAAAAGAAACAGATCTGTTCAGAGTTAACTGTCGTCAATCAAACACTCAGCACTAAGGAATTCCATCCTAGGTCTGTCAGCACATTGTATTCAGCAATTTAAAATGAGATTGTGTGATTGCTGAAACAGTGTTGTGGTGTGAAACTGATTACACCTCGCAACACCACTTTACTGGCATCCACAAACAGATATGCAGCTATGAAATTTGAACAGATGCCAGCTGGAAGTCGCCCTTTTGTGCAGATCTAAGAACCTCTTGGATAAGATGGTGACATGTGGGGTATCTACTCCTACATCTGCGCAATAGAGCGACACCTATGAAGAAAGAACAAGAGTGAAAATGCagaatttctttctttcactacACTGCAGCATTCAGTCCAGCCTTCACCACTAGGGTGAgacagtgagtagcttctcttCAATCTCCTCTGCCCATCCTGCTTGTTCTCCTCTCACTGAATGTCCTCTACATAGTTGGCAGGGTAGAGTCCCACAGTGCCGTCTTTCAGGCGTCCTTTGCACCAACCTTGGTCGTCCTCCTCTCCAATTTTAGTAAATTCATCACCTGCTTTAAAGCTCAGCTCATCCTGCTCCTGGCCCTCATAATCATACAAAGCCCTGACAGGTACAGAGATGACTGGAGAATTTGGCTCATCCTCAAATGGATTCCCGTTTCCATTAGAGTCTGCTCCAAATGGGTTCCCGGTTTCCTCATCTGACCAATCCTGCGTCTTCTCCACACTGCTAGCACTGTTGTTATTGGTCTTTGCTGGTCGGTCTCCTGTTTGGTTGATGCCCGTTAAGGTCACTTCATCGCTtggcttctttttttctcttcggCTCAGTGTGCGGTTTAGGTCTATGGACCACTCCTCAAACTGAGGCCAGTTCATAGGCATGCCTGGGCCATGGTTTGAGCGGAACCATTTCAGATCCTCCTCTGCATCAGCTGCCTGGATCGAGTCTTCCAAATTCTGATACACAGTCTGGAATTGTGATTAGTAGAGAGGTCAAGATGCTGCTTGACTTCCAGAAGGAGTTCTTTGAAGAAGCTGAGTCTCTTATCCTCAAACTGCTGGCACTGTTCAAACACCTGCTCCATGTTCTCCATGTACTGAGGGGTCACCTTATCCAGCTCCTCCATCCTGTTGGCACTTCTCTACTTTGTCCTGGAGCTTTTTCTGAGCCTCTGGGTTGGTGTTGCTTTCTAGTTTGCTAGTGTTCTCCCTGCTGGTGGCCAGCTTTTCCTCCTTGCACGCTGTGTGGTAGACTTTCTTCGTCGTATCCACctctttGAGTTTCTTGGCCCAGGGTTTCTGAGCTTTTCGAAAGCCGTCGTCAGCCTCCTTGGTTTCCTTGAAGCCACCGATCATCTGCTTGTGGTATGCATCTTTCTGCCAGTTCTTCACCTTTTCAAAGTCTTCAGCCATCAGTGCAGCTTTCACCTCCATGTGAAGGTCACTCACCTTCTCCGCCTCTGTCATCAGAGCACACCATGCCCGCTCCACTGTCCCGTATTGAGGTCCTTTCTCGATCAGCTGTCTCCAGCGCTTGGCCCACTCCGTGAGCTGCTGTGCGTATGCCTTTTCGATGCGGGCTCGCTCGTGGATGCAGTTCATCAGGTCATTACACAGCCTGTTTCCATCGTCCACTCGTTTTACGGTCCTCTTATAGTTCCCAATCTCCCAAAAGCTGTCACTGGAGACGTCGATCAAGGAGTCGTTATAGGTGCCGGACATGGCTGCTTTCTTTGTTAACCAGTGTTCACTTGGAGCTTAGTTTCAGCAGGTCCAATTTTAAACGAAGATTCGCACCGAAATGAGAAAGCTTGACGGATCTCTAGCTGGTTTTCCCTCAGTTTTTCAGAGCCACTCCATGGCCGGTCGAGAGGCTGCAGTGTAGTGCCGTGTTCTCCTGCTTCTGCTTCTCAGGAGGCGCGGCTCTCTGACCTCATATCCCCCATAAACTACAGGAGCAGTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84681 lncRNA upstream 8216 8451492 ~ 8455911 (+) True G62810
TU84678 lncRNA upstream 29745 8433736 ~ 8434382 (+) True G62807
TU84651 lncRNA upstream 49088 8404687 ~ 8415039 (+) False rab19
XR_001518662.2 lncRNA upstream 89432 8370763 ~ 8374695 (+) True LOC107197604
TU84550 lncRNA upstream 512675 7949838 ~ 7951452 (+) True G62710
TU84758 lncRNA downstream 29279 8525568 ~ 8525767 (+) True G62873
TU84803 lncRNA downstream 117929 8614218 ~ 8614523 (+) True G62902
TU84846 lncRNA downstream 460462 8956751 ~ 8956951 (+) True G62945
TU84848 lncRNA downstream 500379 8996668 ~ 8998907 (+) True G62947
TU84850 lncRNA downstream 517410 9013699 ~ 9013925 (+) True G62949
XM_007229832.3 mRNA upstream 32137 8428552 ~ 8431990 (+) True ckap4
XM_007229829.3 mRNA upstream 49088 8401840 ~ 8415039 (+) True rab19
XM_022671291.1 mRNA upstream 542903 7820355 ~ 7921224 (+) False LOC103021322
XM_015605601.2 mRNA downstream 14226 8510515 ~ 8516534 (+) True LOC107197608
XM_015605602.2 mRNA downstream 21691 8517980 ~ 8525037 (+) True LOC103044524
XM_022671304.1 mRNA downstream 29929 8526218 ~ 8536561 (+) False LOC103041471
XM_022671305.1 mRNA downstream 71008 8567297 ~ 8572672 (+) True sapcd1
XM_022671306.1 mRNA downstream 293066 8789355 ~ 8882696 (+) True LOC103045143
TU84211 other upstream 1608365 6851230 ~ 6855762 (+) True G62455
TU83965 other upstream 2470133 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 2709843 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 5160129 3296546 ~ 3303998 (+) True G61575
TU84764 other downstream 36470 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 37059 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 937148 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 1150290 9646579 ~ 9650087 (+) True G63051
TU85565 other downstream 3971761 12468050 ~ 12468902 (+) True G63432

Expression Profile