RNA id: TU84676


Basic Information

Item Value
RNA id TU84676
length 1239
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G62805
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 8464127 ~ 8496289 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTAAACAGgcattttacactaataagGCTGCTGGAATTTGCAACCTTTTTATTACCGAGTCAAGCAGGTGGGGATTCCCCAGGGGATATCTATTTAAGAAGCAGGACAGCATGCTGATATTTTAGGAAGTctgtgaagctttttttttttttttaacttcactGGTATATAATGTTCGAGCCATAACAGGCCACTGGAAAGGTTACTATTTCTGAAtggaggaagaaggaaattaaatcaaattacttTGTTAACGTCAATAAAAAATAGTGAAGAAGAAATTCAATACCTTTACAAATATGGGCCTCATAATGTAGTTCTGCTTTTTTGCTCTGACTGGATTTAGCTATTCTGACAGTTTACACTTGAAAACGTAAAGTTATGTTCATACAGTAGCTGgtccaaaactaaaaatgtggTCCAAATTCAAAAGTggtctaaataaaataattataatacatttaaaaaaactacttGTGGCTTAACAGTTTGTGGTGTGTTACCTGTTGTTATTGGTCTTTGCTGGTCGGTCTCCTGTTTGGTTGATGCCCGTTAAGGTCACTTCATCGCTtggcttctttttttctcttcggCTCAGTGTGCGGTTTAGGTCTATGGACCACTCCTGGTAACACAACAgagacaaacacagaaacacacacatgagTGCACAGACTGTCCCTAACAAAGCATGAAACAGCTGAGCCCTAATTCTGGCCTAGTGGCTTATGTGTAATGAGTTGTAACTAGCCTctatcacacaaacacacatgagcacacacacacacacacacgtgtctgTTTGTCAGATTACATCTTGGCCTGAGTACGGTTGAGTTAGCATTCATAACCTCATACTGTTTACGAAACAGAAGTTTCACAAGTGCTCTGTATCTTACTGCTATTCAACAGAAACAAATGTTTCTATCAacacgccacacacacacacacacacacacacacacacacacacacacacaccacacacacacacaccacacacacacaccaggccACCCCACACAGCAAATAAAACAGCTGAAGTGTTCAGCACTATCAGACGCAAACAGTAGATTCACCAGCTGCTGTTAGCCTGACAACTTTCACATGACTACAAAGAACTCTTTACTAAACATACACCAATTTCTATATATCAAAAGGTATTTTTTTACACTACCCTAAGTGTATTTCAAGTGCTTCATATTGTTCCAGATCAATGAGTATATAAACATGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84672 lncRNA upstream 1801 8464127 ~ 8470192 (+) False G62805
TU84674 lncRNA upstream 4559 8464127 ~ 8467434 (+) False G62805
TU84681 lncRNA upstream 16082 8451492 ~ 8455911 (+) True G62810
TU84678 lncRNA upstream 37611 8433736 ~ 8434382 (+) True G62807
TU84651 lncRNA upstream 56954 8404687 ~ 8415039 (+) False rab19
TU84675 lncRNA downstream 6842 8480145 ~ 8496289 (+) False G62805
TU84758 lncRNA downstream 52265 8525568 ~ 8525767 (+) True G62873
TU84803 lncRNA downstream 140915 8614218 ~ 8614523 (+) True G62902
TU84846 lncRNA downstream 483448 8956751 ~ 8956951 (+) True G62945
TU84848 lncRNA downstream 523365 8996668 ~ 8998907 (+) True G62947
XM_007229832.3 mRNA upstream 40003 8428552 ~ 8431990 (+) True ckap4
XM_007229829.3 mRNA upstream 56954 8401840 ~ 8415039 (+) True rab19
XM_022671291.1 mRNA upstream 550769 7820355 ~ 7921224 (+) False LOC103021322
XM_015605601.2 mRNA downstream 37212 8510515 ~ 8516534 (+) True LOC107197608
XM_015605602.2 mRNA downstream 44677 8517980 ~ 8525037 (+) True LOC103044524
XM_022671304.1 mRNA downstream 52915 8526218 ~ 8536561 (+) False LOC103041471
XM_022671305.1 mRNA downstream 93994 8567297 ~ 8572672 (+) True sapcd1
XM_022671306.1 mRNA downstream 316052 8789355 ~ 8882696 (+) True LOC103045143
TU84211 other upstream 1616231 6851230 ~ 6855762 (+) True G62455
TU83965 other upstream 2477999 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 2717709 5746204 ~ 5754284 (+) True LOC111192936
TU83070 other upstream 5167995 3296546 ~ 3303998 (+) True G61575
TU84764 other downstream 59456 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 60045 8533348 ~ 8540123 (+) True LOC103041471
XR_002650190.1 other downstream 960134 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 1173276 9646579 ~ 9650087 (+) True G63051
TU85565 other downstream 3994747 12468050 ~ 12468902 (+) True G63432

Expression Profile