RNA id: TU84695


Basic Information

Item Value
RNA id TU84695
length 2283
lncRNA type intronic
GC content 0.38
exon number 2
gene id G62821
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 8277685 ~ 8279994 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCACAGCCAAACTGAAGCATTGTGAGTGAAAGAGTTCCTTTAAGTGATGCACACAAAAGATATTAGAGTTCGTCCTAACCAGCTTTTTCTGCATTGGTTTCATTGGTTAGATATTtggttagttaattagttaagtaGCATAATTATAATGTTAGTTAATTGATTAGTTTGTTAGATATTAGATAGAAGACCCTGTAGTTGGTTTGTTGTTGAGTTGTTGAGCTACCTATTACTTTAGTtaagttaccatatttctttaattttccccaaaatcgttCCTGCACCTTAATCTGGTGTGTCTTTTGTacgaattttaccagtcaggttgtaaggagcagtaaagccactctgctctgaagcagtattagttttagtattagtattactaCCCGCTAAATGagctaagagctagctctttcgccgttcagaggtgagtattatcattaCTATAGCAAGTCGCTAGGTAGATAAGTAGAGTAGCTAAATGAttaagtagttagttagttagttagttagttgcattcagctactttaagttgcattcatttctgacacagatgtgacaaatgcacacacacacttagcctGTCTAATCCCTGTAGAGACTGTACTGCTCTggagtaaataaacatgaacttatcatacctaatgccaggcatgggaCAGAAAAAGCATGCATGATTAAACTGTGGAGCATTAGAACTGTGAAATGATGCatcatcacagttttaattccaTCCGAAGTGGggattttggcagtgtgggatgaggtgaggtgagATTATGAACATCCAACATCCTCACCTCATTAATGCTCTTTTTGCTGAATGCAAACAAAATGTAGTAGAAAGTCTTTTCTGGACAGTAGGACAGTTACTATAACTAAAGCAGATAAAAAACTAGTTTTAATACCCTCAAAATTCAGATGTTTTTGTGCATAAAGTGTAGCTCTGCAGTTAATTTGAGTGATTGCTTGGTTAGCTTGATATCTCTataatggttggttggttgttgggcaGTTGCTAGAtagatacattatatatacatactatatAGTTGTATAGTTAAGTAGAATCCGGGTGAGAATCCATTGAGGTGATTTGCATTTGAACATACACACTTTTGTAAATGTCACaagacacacaaatacacatgcTATGAAAGGTTAGGTGGTTGTATCAGGCTGTTACTAACCTGTCTGATTCTGCCTGCTGTGAGTCTTTCTCTGTTTAAGCTCCCAGTCTCTCCACCGCATCACTGTCTCCTGTCTAAAGAGCCCCCTGATCCACACTAACCCACATACCCCTCCTCCCTACTGCGTGATGTGCTCAGCAGAccttactgctctctctctctccctctctctcccattttcttttttctttctttaaaggaacagttagacaaaaatactttaaatacttaattttccaCTGAAATGCAGTTGATAATGTAGTTATATAGATTTTTAGTTCTttcaattaatattttagtaCCATACTAAAGAAACACACGAAATGTTCCCCTAGTGTGAACTGCACACATTACATCAGAGTTTAAAAATCTTGTAGCAGTGatagtttatttaagtttcCATTACTCAAGTAGCCACAGGGTAAAATACCAATTAAAACCAGTTTAAAGATAAAAGGTGTCTCCCAACAACCATGCAACACCTGATGGACCACCAtcaaaatcccccctccccttTCCTCAGCACTTAAAATGTTTCTCCTTGAGAGAGAAGGAATAAATCAAGCTCCTCTTTTGCTTCAAATCTTAGAAATTGaatgcattcagtgacaagagcatCAAGATTTGTGATGATTACCTCATCATCCGCAACTCATCACTTCAATTTTTGAATAAGGattgaatggagcaccatcttTCCAGAGAACAgagttccacagctcaatgctaggGATTTATGCATTTTATTCTCCATGCCTGGCATTTGGTTTCGCCATCGTTCGCCATggagagtcctattcttttggcaacACTTCTCTACTGgtactagacaagctgtgtatggtgtgtgcatttacacatctgtgtcagcaatggatgcaacCTAAACTACAGTAGCTGAATGGGTTCATTGGAGAGAGTGTCCAGAAAGAATTGGATAGCGATGCATCTTTAGAATCATTGGCATTGACCGATCGGCATAGATTGGGACGATATTTCAAACCAATACTTCCctgacatatttattttatgccaAAAAAGGACCAAGGGGCCCTATTTATTCACAATAATAATGATACACATTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84589 lncRNA downstream 326251 7949835 ~ 7951434 (-) True G62748
TU84572 lncRNA downstream 466903 7810553 ~ 7810782 (-) True G62732
TU84482 lncRNA downstream 653640 7620926 ~ 7624045 (-) True G62661
TU84479 lncRNA downstream 658296 7617544 ~ 7619389 (-) False LOC103046475
TU84480 lncRNA downstream 660290 7616957 ~ 7617395 (-) True G62659
TU84707 lncRNA upstream 52514 8332508 ~ 8333323 (-) True G62832
TU84739 lncRNA upstream 153721 8433715 ~ 8434396 (-) True G62858
TU84808 lncRNA upstream 366891 8646885 ~ 8647296 (-) True G62907
TU84851 lncRNA upstream 740495 9020489 ~ 9020985 (-) True G62950
TU84988 lncRNA upstream 1126411 9406405 ~ 9409548 (-) False G63034
XM_022671298.1 mRNA downstream 13936 8253845 ~ 8263749 (-) True LOC111192944
XM_022671170.1 mRNA downstream 24776 8224651 ~ 8252909 (-) True LOC103043012
XM_022671297.1 mRNA downstream 63611 8175026 ~ 8214074 (-) True LOC103036167
XM_022671150.1 mRNA downstream 103869 8166485 ~ 8173816 (-) True LOC111192870
XM_022671295.1 mRNA downstream 287884 7958030 ~ 7989801 (-) True LOC103022071
XM_007229828.3 mRNA upstream 101503 8381497 ~ 8389275 (-) True LOC103036771
XM_015605568.2 mRNA upstream 109786 8389780 ~ 8400903 (-) True cct2
XM_015605582.2 mRNA upstream 135868 8415862 ~ 8444288 (-) False terf2
XM_015605580.2 mRNA upstream 135868 8415862 ~ 8444286 (-) True terf2
XM_007229837.3 mRNA upstream 167316 8447310 ~ 8462554 (-) True arfgap3
TU84600 other downstream 103883 8166678 ~ 8173802 (-) False LOC111192870
TU84255 other downstream 1539737 6671610 ~ 6737948 (-) False G62484
TU84254 other downstream 1539737 6735163 ~ 6737948 (-) True G62484
XR_002650150.1 other downstream 1554155 6722102 ~ 6723530 (-) True LOC111192868
XR_002650186.1 other downstream 1582301 6633010 ~ 6695384 (-) False pphln1
TU85152 other upstream 1338667 9618661 ~ 9622788 (-) True G63104
TU85294 other upstream 2034805 10314799 ~ 10411231 (-) False G63217
TU85708 other upstream 4040561 12320555 ~ 12365739 (-) True G63516
TU86395 other upstream 6505327 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 6714170 14994164 ~ 14994832 (-) True G64060

Expression Profile