RNA id: TU84739


Basic Information

Item Value
RNA id TU84739
length 682
lncRNA type intronic
GC content 0.40
exon number 1
gene id G62858
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 8433715 ~ 8434396 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaagctgcgggagaagaGCATCAATACACCCAAATCATTTTTGGCACCCGAGTTCTACTTTAATGTTACAAAATTAGTGCCATTAACCTGCTCTTAGCTATCGGCAAGTAATCAAGTTTACATCCAGTCAACATCCAGGCTAAGTCATTGTTCTAGGCATCACGATAGGAGTCATGAGTCATCAGGTTTTGttacactatatgttcaaatgtctgtggacactttttttaatgaatgctgTCAGCTACGTTATGTTATACCCACTGCACAGACAttgcttgtctagtccctgtagaaaggtattgccaatagaatagagcATTTTGGCACCATGCATAGGCATCAGGCATGGGCTAGCGAAGGATAACATGCCCAGCACTGGTCTGTGAAGcattggaactgtgttctctgcaaTGATGCTGCTTTGTTTAGTACATTTGTTATGGTGAGCATTAAACATACTGAGCTCactaatattgttgttttcttttttttatgaagagGTGTCCctgtacttttgtccatactgTGTACATGTATGTCCTGAAACATTAACTTGAAACATTAAGAGTGAGTCTCtgtcacatttgtaaataattgGAAGCAGATATGGGTGTGTCTGGAAGTGAGCGTGGCCACAGCTTTCCCtggacatttttaataaaaggtCAAACTTTTTACC

Function

GO:

id name namespace
GO:1990904 ribonucleoprotein complex cellular_component

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84707 lncRNA downstream 100392 8332508 ~ 8333323 (-) True G62832
TU84695 lncRNA downstream 153721 8277685 ~ 8279994 (-) True G62821
TU84589 lncRNA downstream 482281 7949835 ~ 7951434 (-) True G62748
TU84572 lncRNA downstream 622933 7810553 ~ 7810782 (-) True G62732
TU84482 lncRNA downstream 809670 7620926 ~ 7624045 (-) True G62661
TU84808 lncRNA upstream 212489 8646885 ~ 8647296 (-) True G62907
TU84851 lncRNA upstream 586093 9020489 ~ 9020985 (-) True G62950
TU84988 lncRNA upstream 972009 9406405 ~ 9409548 (-) False G63034
TU84992 lncRNA upstream 972009 9406405 ~ 9409548 (-) False G63034
TU84993 lncRNA upstream 972009 9406405 ~ 9409548 (-) False G63034
XM_015605568.2 mRNA downstream 32812 8389780 ~ 8400903 (-) True cct2
XM_007229828.3 mRNA downstream 44440 8381497 ~ 8389275 (-) True LOC103036771
XM_022671301.1 mRNA downstream 72407 8269640 ~ 8361308 (-) False dgki
XM_022671299.1 mRNA downstream 72407 8269640 ~ 8361308 (-) True dgki
XM_022671300.1 mRNA downstream 72408 8269640 ~ 8361307 (-) False dgki
XM_007229837.3 mRNA upstream 12914 8447310 ~ 8462554 (-) True arfgap3
XM_007229833.3 mRNA upstream 29730 8464126 ~ 8496393 (-) True LOC103038884
XM_007229835.3 mRNA upstream 29730 8464126 ~ 8496388 (-) False LOC103038884
XM_007229834.3 mRNA upstream 29730 8464126 ~ 8496387 (-) False LOC103038884
XM_007229836.3 mRNA upstream 29730 8464126 ~ 8496381 (-) False LOC103038884
TU84600 other downstream 259913 8166678 ~ 8173802 (-) False LOC111192870
TU84255 other downstream 1695767 6671610 ~ 6737948 (-) False G62484
TU84254 other downstream 1695767 6735163 ~ 6737948 (-) True G62484
XR_002650150.1 other downstream 1710185 6722102 ~ 6723530 (-) True LOC111192868
XR_002650186.1 other downstream 1738331 6633010 ~ 6695384 (-) False pphln1
TU85152 other upstream 1184265 9618661 ~ 9622788 (-) True G63104
TU85294 other upstream 1880403 10314799 ~ 10411231 (-) False G63217
TU85708 other upstream 3886159 12320555 ~ 12365739 (-) True G63516
TU86395 other upstream 6350925 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 6559768 14994164 ~ 14994832 (-) True G64060

Expression Profile