RNA id: TU84851


Basic Information

Item Value
RNA id TU84851
length 497
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G62950
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9020489 ~ 9020985 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgcgcactctctccgcttttagactctttggcctgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggcctgtttttctgcgctagaaatgcgcaccctctccgcttttagactcttttgccccgttttttctgcgctagaaatgcgcactctctccgcttttagactcttttgccccgttttttctgcgctagaaatgcgcaccctctccgcttttagactctttggcctgtttttctgcgctagaaatgcgcactctctccgcttttagactctttggcctgtttttctgcgctagaaatgcgcaccctctccgcttttagactctttggcctgtttttctgcgctagaaatgcgcaccctctccgcttttagactctttggcctgtttttctgcgctagaaatgcgcaccctctccgcttttagactctttggccccgttttttctgcgctagaaatgcgcaccctctccgcttttag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84808 lncRNA downstream 373193 8646885 ~ 8647296 (-) True G62907
TU84739 lncRNA downstream 586093 8433715 ~ 8434396 (-) True G62858
TU84707 lncRNA downstream 687166 8332508 ~ 8333323 (-) True G62832
TU84695 lncRNA downstream 740495 8277685 ~ 8279994 (-) True G62821
TU84589 lncRNA downstream 1069055 7949835 ~ 7951434 (-) True G62748
TU84988 lncRNA upstream 385420 9406405 ~ 9409548 (-) False G63034
TU84992 lncRNA upstream 385420 9406405 ~ 9409548 (-) False G63034
TU84993 lncRNA upstream 385420 9406405 ~ 9409548 (-) False G63034
TU84994 lncRNA upstream 385420 9406405 ~ 9407917 (-) False G63034
TU84995 lncRNA upstream 385420 9406405 ~ 9407917 (-) False G63034
XM_022671151.1 mRNA downstream 430173 8587268 ~ 8590316 (-) True LOC103042080
XM_007229844.2 mRNA downstream 466924 8542470 ~ 8553565 (-) True LOC103041774
XM_007229842.3 mRNA downstream 512910 8499970 ~ 8507579 (-) False ttll1
XM_007229839.3 mRNA downstream 512911 8498224 ~ 8507578 (-) True ttll1
XM_022671309.1 mRNA upstream 150006 9170991 ~ 9192565 (-) False LOC103045460
XM_022671310.1 mRNA upstream 150006 9170991 ~ 9192349 (-) False LOC103045460
XM_022671308.1 mRNA upstream 150006 9170991 ~ 9192339 (-) True LOC103045460
XM_007229847.3 mRNA upstream 202729 9223714 ~ 9227248 (-) True LOC103042700
XM_015605619.2 mRNA upstream 202729 9223714 ~ 9227238 (-) False LOC103042700
TU84600 other downstream 846687 8166678 ~ 8173802 (-) False LOC111192870
TU84255 other downstream 2282541 6671610 ~ 6737948 (-) False G62484
TU84254 other downstream 2282541 6735163 ~ 6737948 (-) True G62484
XR_002650150.1 other downstream 2296959 6722102 ~ 6723530 (-) True LOC111192868
XR_002650186.1 other downstream 2325105 6633010 ~ 6695384 (-) False pphln1
TU85152 other upstream 597676 9618661 ~ 9622788 (-) True G63104
TU85294 other upstream 1293814 10314799 ~ 10411231 (-) False G63217
TU85708 other upstream 3299570 12320555 ~ 12365739 (-) True G63516
TU86395 other upstream 5764336 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 5973179 14994164 ~ 14994832 (-) True G64060

Expression Profile