RNA id: TU84852


Basic Information

Item Value
RNA id TU84852
length 772
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G62951
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9032803 ~ 9033574 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgacgaggaaagcggacacaagtgcaggtagggtgaaatcaataaataataatttaataaataaataacaagtaacaaagaaacaagaaacaagtaaacacttaaatacggaacagggagatatatacaaggaacaagggagtgaaccaaataaatgaaactagataaacaaataaccaataaccaaaacaaaccagtaagactagagaacataaactatgcaaaacaagaagtactaatgataaacaaacagggagtaaagaaacaaacgaggtaagaacacaaagaaactagaaactaccaagaataaccaagaagataaacaaaactaaacagggcagggatatatatttacaagggaaaacaaacaagaagctaatactagacagggaaaaactaggctagacaataataaataaactaagcagaaaggaactaaacactaagcagggaactggggaaacgaggaagaaacaagaaactagaaaactaaacaagaaataaacacggagcaagaactagggctatgaaacgcagagaaacacagagagacaaaacaacaggggaaggtgcaaagaccgacggagacaaagtggcagaggagggctatttaaagaaacaggaaacgcactataattggaaacacctggggaaggggcggagctacaaatgagacaagtggtggaaaggtactgagacgggagacacagaggagcataggtcacgtggggaagacacacagagacacgaaacgagaccaggatgtgacatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84850 lncRNA upstream 18878 9013699 ~ 9013925 (+) True G62949
TU84848 lncRNA upstream 33896 8996668 ~ 8998907 (+) True G62947
TU84846 lncRNA upstream 75852 8956751 ~ 8956951 (+) True G62945
TU84803 lncRNA upstream 418280 8614218 ~ 8614523 (+) True G62902
TU84758 lncRNA upstream 507036 8525568 ~ 8525767 (+) True G62873
TU84949 lncRNA downstream 372757 9406331 ~ 9407914 (+) False G63012
TU84942 lncRNA downstream 373074 9406648 ~ 9408413 (+) False G63012
TU84950 lncRNA downstream 373074 9406648 ~ 9409742 (+) True G63012
TU84940 lncRNA downstream 374434 9408008 ~ 9411619 (+) False G63012
TU84952 lncRNA downstream 374434 9408008 ~ 9409742 (+) False G63012
XM_022671306.1 mRNA upstream 150107 8789355 ~ 8882696 (+) True LOC103045143
XM_022671305.1 mRNA upstream 460131 8567297 ~ 8572672 (+) True sapcd1
XM_022671304.1 mRNA upstream 496242 8526218 ~ 8536561 (+) False LOC103041471
XM_015605602.2 mRNA upstream 507766 8517980 ~ 8525037 (+) True LOC103044524
XM_015605601.2 mRNA upstream 516269 8510515 ~ 8516534 (+) True LOC107197608
XM_022671307.1 mRNA downstream 22849 9056423 ~ 9168847 (+) True LOC103042395
XM_022671311.1 mRNA downstream 162558 9196132 ~ 9246664 (+) True kiaa0930
XM_015604952.2 mRNA downstream 260246 9293820 ~ 9423281 (+) True phf21b
XM_007245887.3 mRNA downstream 260250 9293824 ~ 9423281 (+) False phf21b
XM_015604951.2 mRNA downstream 260250 9293824 ~ 9423281 (+) False phf21b
TU84760 other upstream 492680 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 499571 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 2177041 6851230 ~ 6855762 (+) True G62455
TU83965 other upstream 3038809 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 3278519 5746204 ~ 5754284 (+) True LOC111192936
XR_002650190.1 other downstream 399863 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 613005 9646579 ~ 9650087 (+) True G63051
TU85565 other downstream 3434476 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 3625874 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 4122652 13156226 ~ 13161320 (+) False LOC111192955

Expression Profile