RNA id: TU84942


Basic Information

Item Value
RNA id TU84942
length 306
lncRNA type intronic
GC content 0.54
exon number 3
gene id G63012
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9406331 ~ 9411619 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaacaccttagcaaccaccccagataccatagcaacaccttagcaaccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84852 lncRNA upstream 373074 9032803 ~ 9033574 (+) True G62951
TU84850 lncRNA upstream 392723 9013699 ~ 9013925 (+) True G62949
TU84848 lncRNA upstream 407741 8996668 ~ 8998907 (+) True G62947
TU84846 lncRNA upstream 449697 8956751 ~ 8956951 (+) True G62945
TU84803 lncRNA upstream 792125 8614218 ~ 8614523 (+) True G62902
TU84961 lncRNA downstream 23086 9431499 ~ 9433553 (+) False LOC111192948
TU84964 lncRNA downstream 23086 9431499 ~ 9433553 (+) True LOC111192948
TU84966 lncRNA downstream 23086 9431499 ~ 9433553 (+) False LOC111192948
TU84967 lncRNA downstream 25246 9433659 ~ 9459688 (+) True G63022
TU84976 lncRNA downstream 73849 9482262 ~ 9482528 (+) True G63027
XM_022671311.1 mRNA upstream 159984 9196132 ~ 9246664 (+) True kiaa0930
XM_022671307.1 mRNA upstream 237801 9056423 ~ 9168847 (+) True LOC103042395
XM_022671306.1 mRNA upstream 523952 8789355 ~ 8882696 (+) True LOC103045143
XM_022671305.1 mRNA upstream 833976 8567297 ~ 8572672 (+) True sapcd1
XM_022671304.1 mRNA upstream 870087 8526218 ~ 8536561 (+) False LOC103041471
XM_022671319.1 mRNA downstream 210253 9618666 ~ 9639280 (+) True LOC103035489
XM_007237082.3 mRNA downstream 276944 9685357 ~ 9693289 (+) True LOC103035797
XM_007237093.2 mRNA downstream 372058 9780471 ~ 9783136 (+) True LOC103038615
XM_007237086.3 mRNA downstream 480804 9889217 ~ 9898004 (+) True LOC103036813
XM_022671320.1 mRNA downstream 492072 9900485 ~ 9925895 (+) True LOC103038308
TU84760 other upstream 866525 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 873416 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 2550886 6851230 ~ 6855762 (+) True G62455
TU83965 other upstream 3412654 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 3652364 5746204 ~ 5754284 (+) True LOC111192936
XR_002650190.1 other downstream 25024 9433437 ~ 9440564 (+) False LOC111192948
TU85065 other downstream 238166 9646579 ~ 9650087 (+) True G63051
TU85565 other downstream 3059637 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 3251035 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 3747813 13156226 ~ 13161320 (+) False LOC111192955

Expression Profile