RNA id: TU84967


Basic Information

Item Value
RNA id TU84967
length 3514
lncRNA type inter_gene
GC content 0.44
exon number 13
gene id G63022
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9433659 ~ 9459688 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAACAGTGGTCCTTTAACAGCAGTCGCAGAAAGGTGGTCCTGTAACGGTGGTCCCCTTACTGTGACCCTCTCATGGTGGTCGCCGAACTTTGGTTGTGCAACCATGGTCCCCTAATGGTGTTTTCCCAGTGATGTTCAACCAACCCATTTCAATAATGATACTGACTAAGAAAAGAACCAGAGTTAGGACTGTATGGATATACTGTGTAGTGTCCAGGCATTCTTAATAAAGCTGAATTGTTAGCAGTTCTGTTCAGTACAGGCGTTTTGAAGTTATTGAACGTTACTTTTTATAGGGACAAACAGAAACGCACATGCTGTTCTCCTGTGAGGAAGGAAAGGAAATCAATAGAAAACAGTGGCCAAACAGGCTTCGCTCGCATTGTTTTGCTTGGGATGTGGGACACAGGTGGGGGCAGCATATGAATCAGGCCAGCTGATAGAAGGCTGGGGCTTTGAGGAGCTGCAGAGTGTCTCTTCCTCTCATACATATTACAGAACACTGCTACCAGCATCGCCTTCAAGGTTATCTCTGCTGCTGCCGGCACAGGGTTGCCATGGCAATCATAAGCAGCACTGATATTTAGGGGAGATGTACTTTGTGTTATGGGTGTTTACAGAGTACCAGGGGGTGCCCTTGTAGTGTTCATGgaattggaaaaaaagaaaatgtattttaaagactGGAACGATGCTTGTAGGCAGCATGTACTTCTCTTTTGTAGATCGGTCTCTACTACTTAAACAGAAACTGTATTAATGTAtactgtattaaacacacagtccagtcagaatattaATAAGTGTACTTGTTCTACATTCATTAGTAAATTTTTTTCAGATTCAATAAGCATATAGGATCACTTTATTATTCTATAATCATAGTCTGTAGTcctctctatctgtttctctgcatactttattatccacCTTTCaaccaaataatagctgcacaGGAGTATAGTcagtaattataaaaatataaagtgcTTCTATATCATCAGAGAAGCTGAAAATAATGAACAGTGAGTGTACAAACACGGAAAATGTCAGAATATTCTAACTGGACTGTGTAGTACCCTACTAGAAACTACTAGGCAGCTCAAACTGTTATAACTGACTAGCTCAGCTTTTGACCAGCATAGGGgctgtttttgtttgagttttatGGTTTATCATCTGGTCTATAAGCAtggttataccacagttagttcagaccttgcaatgtgattggctaagaggcgttctgtgagtgccattatcagccggtaatgcactgtaaccgaagcccTCCATGTGTTACTcctccacatacaggtaacctagcagtaaccgatgcagcacttaccagccaaacagagcagctacaaacagagcagcaatgtaactattttaagcagtgctaattattacacattatagcactccctctcgtgtattattgcttggttaacctgaccaagctaacaaaccagtatgaccaagcctAACCATGCTGTTTGACCAGCATTACTACCATGGTTGACCAGTATAATCAAGTTTAATCCCTGTAAAATTTGTCTGGATAAAACTGGATAACCAGCTTTTGAACCACATCGACTATCAAAAACCAGCCTAAACCAGCCTAAACCAACAAAAGCTGGTCTTGAGCAGGACGCTTCAGCAAGATATTAGTGTATAAAAAAAGCTATGCTTCTTGGCTACAACACTGTATATAGCATTACTGTGcagtaaatgcattttaatgttatttcacAATAAACGTGGCGCAATCAAATCCTTGGTTAGTGTCATATAAAAGAAAAGCGAACAGTAAGTCCTAAGCAATTAAAatattcacaatattaaaagactttacagaataaaaatgtgtttcagtATGTTACAAATGTAGTTTTCAGACATACACAGTATACAAAATACTTGCAAATGCAATTGGTTAGTGTTCTGGCCTGCTGAGACTCTTGATCCCTCGCCCAGTCAGGCCCTCCAGAATCAATACTTCATATTGGAGATCcaatcaataacaataacagcaaaAACAATTCGGCAAGACTGTGGGTTGTACTGGTGGTCTAGCAGAGCCTGATGAGAGTCCGCTCAGGGGAGTACCTGTTGTGGTGGGCAGCGTGAGCTGAAGATAGTGTGATAGTGCTCAATGAGCAGCTCGGTGAACATATTGAGGGGAGAGATAGCGCTGAGGGACACGGTTCCCTGAGGAGGCCAGGCCAGGTTCACCCCGAACACACACGCCAGATTAGAGGAACTCATCTTATTACTGATGCTCTCCTGTGAGACCATATGCAGGAAGCAGACGAGATACTTGACAACGATGAAGTTGTGCTCTGGGAGGGACTCCATAATCCTCTTGCACCGGGAAACCCTCAGGCTGCTCTCCACCTTTGTAAGTTCTTGAATCTGGTTGTATACAGTGAAGGTGAGCACTGGCTCTGGTAGCTCCCGTAGAAACGTCTTCAAGATCACAGCAGGAACGTGCACATCAGAGTACTGGTCAAAGATAACCGGCTTCCCCTGGTTATAGAGTTTCTGGATGTCCTTGATAAGCTGCACTCTGGCTGACCTTCGAAAGATTCCTTCTGTTTTCAAGCCTTTGAGTTTGAGGTATGACACAGTCTGAAACATTACTGGGGGTATcaatgtgttgttgtttttctctcGAATGTACTGTAAGCTCACTCCAAACTGCTGTGTGGGCAGAGGGGGTCTTGGGGGCGGGACCTTCGCTGGAGGGGGCGGTCCTCCTTTCTGAGCAGCCCGGAGCTCTTCGTCATGCCTCAGTACTGCTGGTGGGATGATGAGCTGATCGTAGTTGAGGTGCTCCCTCAGCTCTGCCAGATAGTTCACGTACGTTAACTTCTTGCCAAACTTGTggCTTATTACAGGTTTGAATATGTTCCATATGACTTTAATAAAGTTTGTTGGATGGACCACGTAGAGGGTTTTGAGATTCTTCTTATATTTTCTGTCGAACTCCCTGTAGGCGTCTCGGAGCCAGCGTAGAGAGGGCTTGTTGATGCTGCGCAGGCCGTAGTGGAAGTAGACCACTGTGTAATCACTTTCCACATACTGGTCCAAAGTGTACTTGAGATACTCCAGCAGTCTGTGGTGATTGAGCTGATGTGATGGAGGCATGCAGCAGCTGCTGAAAATAATCAGCTTTCTGCCATATTTATCATcacCTGTAACTTGGAGGATGCCATGTCTGGCAACATCGTAGTAGGGATGGCTCTTGTCTTCACAGGCATTGCCACTGGATGGCGCTACAGGGTACGCTGGAGAATTCCCCTGCTCCTCTTCATCTTTCTGCAGCTCTATTTCTGCCAACTGCTCCAAATCACTTGTTGAGATCATGATGGAAAAGAAATGGGGGGGTGATTTCACAGTTGGACTCAAGTCAGTCAGTAaattCCTTCATGTCGTTACCAGGTGCTACGACTGACTGCTCCAAACTTCCTACCGGCCGCTGCGCATGCGCACTAGCTACAGCTTTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84961 lncRNA upstream 106 9431499 ~ 9433553 (+) False LOC111192948
TU84964 lncRNA upstream 106 9431499 ~ 9433553 (+) True LOC111192948
TU84966 lncRNA upstream 106 9431499 ~ 9433553 (+) False LOC111192948
TU84940 lncRNA upstream 22040 9408008 ~ 9411619 (+) False G63012
TU84950 lncRNA upstream 23917 9406648 ~ 9409742 (+) True G63012
TU84976 lncRNA downstream 22574 9482262 ~ 9482528 (+) True G63027
TU85058 lncRNA downstream 40616 9500304 ~ 9500694 (+) True G63044
TU85061 lncRNA downstream 74885 9534573 ~ 9534831 (+) True G63047
TU85064 lncRNA downstream 182793 9642481 ~ 9644511 (+) True G63050
TU85086 lncRNA downstream 351184 9810872 ~ 9866501 (+) True G63067
XM_015604951.2 mRNA upstream 10378 9293824 ~ 9423281 (+) False phf21b
XM_022671319.1 mRNA downstream 158978 9618666 ~ 9639280 (+) True LOC103035489
XM_007237082.3 mRNA downstream 225669 9685357 ~ 9693289 (+) True LOC103035797
XM_007237093.2 mRNA downstream 320783 9780471 ~ 9783136 (+) True LOC103038615
XM_007237086.3 mRNA downstream 429529 9889217 ~ 9898004 (+) True LOC103036813
XM_022671320.1 mRNA downstream 440797 9900485 ~ 9925895 (+) True LOC103038308
TU84760 other upstream 893536 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 900427 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 2577897 6851230 ~ 6855762 (+) True G62455
TU83965 other upstream 3439665 5982373 ~ 5993994 (+) True c7h12orf75
TU83815 other upstream 3679375 5746204 ~ 5754284 (+) True LOC111192936
TU85065 other downstream 186891 9646579 ~ 9650087 (+) True G63051
TU85565 other downstream 3008362 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 3199760 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 3696538 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 5285047 14744735 ~ 14745082 (+) True G64015

Expression Profile