RNA id: TU84992


Basic Information

Item Value
RNA id TU84992
length 489
lncRNA type inter_gene
GC content 0.53
exon number 4
gene id G63034
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9406405 ~ 9409548 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttcctgcagaaactgcgagtgtgattgcagtgctggctggtatctgctaaggtgttgctaaggtgttgctatggtatccggggtggttgctaaggtgttgctaggcggttgctaaggtgttgctatggtatccggggtggttgctaaggtgttgctaggtggttgctaggtggttgctaaggtgttgctaggcggttgctaaggtgttgctatggtatctggggtggttgctaaggtgttgctaggtggttgctaggtggttgctagggtgttgctaggcggttgctaaggtgttgctatggtatccggggtggttgctaaggtgttgctaggtggttgctagggtgttgctaggcggttgctaaggtgttgctatggtatccggggtggttgctaaggtgttgctaggtggttgctagggtgttgctaggcggttgctaaggtgttgctatggtatccggggtggttgctaaggtgttgctaggtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84851 lncRNA downstream 385420 9020489 ~ 9020985 (-) True G62950
TU84808 lncRNA downstream 759109 8646885 ~ 8647296 (-) True G62907
TU84739 lncRNA downstream 972009 8433715 ~ 8434396 (-) True G62858
TU84707 lncRNA downstream 1073082 8332508 ~ 8333323 (-) True G62832
TU84695 lncRNA downstream 1126411 8277685 ~ 8279994 (-) True G62821
TU85013 lncRNA upstream 5495 9415043 ~ 9418822 (-) True LOC103022044
XR_002650189.1 lncRNA upstream 6588 9416136 ~ 9417083 (-) False LOC103022044
TU85055 lncRNA upstream 72652 9482200 ~ 9482517 (-) True G63041
TU85056 lncRNA upstream 76474 9486022 ~ 9486233 (-) True G63042
TU85153 lncRNA upstream 228140 9637688 ~ 9642240 (-) True G63105
XM_022671314.1 mRNA downstream 139526 9252337 ~ 9266879 (-) False nup50
XM_022671315.1 mRNA downstream 139526 9252337 ~ 9266879 (-) True nup50
XM_007229847.3 mRNA downstream 179157 9223714 ~ 9227248 (-) True LOC103042700
XM_022671317.1 mRNA upstream 25566 9435114 ~ 9459694 (-) False arhgap8
XM_022671318.1 mRNA upstream 25566 9435114 ~ 9459501 (-) True arhgap8
XM_015602383.2 mRNA upstream 441382 9850930 ~ 9864019 (-) False fbln1
XM_007237094.3 mRNA upstream 441382 9850930 ~ 9864019 (-) True fbln1
XM_007237085.3 mRNA upstream 455812 9865360 ~ 9887488 (-) False LOC103036113
TU84600 other downstream 1232603 8166678 ~ 8173802 (-) False LOC111192870
TU84255 other downstream 2668457 6671610 ~ 6737948 (-) False G62484
TU84254 other downstream 2668457 6735163 ~ 6737948 (-) True G62484
XR_002650150.1 other downstream 2682875 6722102 ~ 6723530 (-) True LOC111192868
XR_002650186.1 other downstream 2711021 6633010 ~ 6695384 (-) False pphln1
TU85152 other upstream 209113 9618661 ~ 9622788 (-) True G63104
TU85294 other upstream 905251 10314799 ~ 10411231 (-) False G63217
TU85708 other upstream 2911007 12320555 ~ 12365739 (-) True G63516
TU86395 other upstream 5375773 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 5584616 14994164 ~ 14994832 (-) True G64060

Expression Profile