RNA id: TU85061


Basic Information

Item Value
RNA id TU85061
length 259
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G63047
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9534573 ~ 9534831 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttttaaaaaaaatatttggaaaagtgtttttaatttggctgtattaaaagaatgacatatgtaggaatgtccgcaacatttcagattctgataatctaattgtgtgtaagtggttcacatgtcgttattttagattttttttgtaaacctgtcttaaaatgtaagggatactgaacctacgttgggctggtgggacaactttaagcggacagaggaaaatatcccttattttttaatctaaaatttgaCAGGTATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85058 lncRNA upstream 33879 9500304 ~ 9500694 (+) True G63044
TU84976 lncRNA upstream 52045 9482262 ~ 9482528 (+) True G63027
TU84967 lncRNA upstream 74885 9433659 ~ 9459688 (+) True G63022
TU84961 lncRNA upstream 101020 9431499 ~ 9433553 (+) False LOC111192948
TU85064 lncRNA downstream 107650 9642481 ~ 9644511 (+) True G63050
TU85086 lncRNA downstream 276041 9810872 ~ 9866501 (+) True G63067
TU85101 lncRNA downstream 347284 9882115 ~ 9884275 (+) True G63081
TU85138 lncRNA downstream 437421 9972252 ~ 9976111 (+) True G63090
TU85139 lncRNA downstream 445687 9980518 ~ 9984728 (+) True G63091
XM_015604951.2 mRNA upstream 111292 9293824 ~ 9423281 (+) False phf21b
XM_022671319.1 mRNA downstream 83835 9618666 ~ 9639280 (+) True LOC103035489
XM_007237082.3 mRNA downstream 150526 9685357 ~ 9693289 (+) True LOC103035797
XM_007237093.2 mRNA downstream 245640 9780471 ~ 9783136 (+) True LOC103038615
XM_007237086.3 mRNA downstream 354386 9889217 ~ 9898004 (+) True LOC103036813
XM_022671320.1 mRNA downstream 365654 9900485 ~ 9925895 (+) True LOC103038308
XR_002650190.1 other upstream 94009 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 994450 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 1001341 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 2678811 6851230 ~ 6855762 (+) True G62455
TU83965 other upstream 3540579 5982373 ~ 5993994 (+) True c7h12orf75
TU85065 other downstream 111748 9646579 ~ 9650087 (+) True G63051
TU85565 other downstream 2933219 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 3124617 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 3621395 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 5209904 14744735 ~ 14745082 (+) True G64015

Expression Profile