RNA id: TU85101


Basic Information

Item Value
RNA id TU85101
length 623
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id G63081
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9882115 ~ 9884275 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTGGTTGATTAAGATCTTcccttttctgtttatttccattatcAAATTGCAGATGGCCTTTTTAATCTCATTGGCAACAGACTTGCGGTTTTCATCCACTTGCTGAAGACCATTGTTTATTGTGTCCGACACATCTCCAATGGCCTTCCTCTTTTCTTGAAGTTGACCAGTCATCTTTTCCAAATGATCCTTGTGGTTCCTGTATGCATCCTCCAGAAACTGATAATTATGATCCTTGTGTTTAAGCAGTTGACAGTCCCTGCAAGTCAGACGGTCACAGGTTTCACAGAACAGCTTCAAAGGTTCTTGCTTGTGGATATCACAGAAAACAGGCTTCTGTGTGGAAGCACCCATTGCATCTGAAGACATCTCCGCTATCTGTCTGATGGTGTGATCCCTGGTGAACTTCACCCGTTGATGAGCCTCAATGCAGGTGACACACAGaaactccacacactccacacagaaaCCAGTTGCCTCAGTGTTGTCATCACAGCTCATACACAGCTGACTGGTCTTCTCCACTGTGCTGCTTGGCACCTCCATACTATCCTTGGCAAAGAAGTTATCCAAGACCTCAACTTCCATGCATTCCTGATGACAAACTGGACAGCGGATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85086 lncRNA upstream 15614 9810872 ~ 9866501 (+) True G63067
TU85064 lncRNA upstream 237604 9642481 ~ 9644511 (+) True G63050
TU85061 lncRNA upstream 347284 9534573 ~ 9534831 (+) True G63047
TU85058 lncRNA upstream 381421 9500304 ~ 9500694 (+) True G63044
TU84976 lncRNA upstream 399587 9482262 ~ 9482528 (+) True G63027
TU85138 lncRNA downstream 87977 9972252 ~ 9976111 (+) True G63090
TU85139 lncRNA downstream 96243 9980518 ~ 9984728 (+) True G63091
TU85141 lncRNA downstream 107483 9991758 ~ 9998972 (+) True G63093
TU85149 lncRNA downstream 188839 10073114 ~ 10073399 (+) True G63101
TU85151 lncRNA downstream 193404 10077679 ~ 10077996 (+) True G63103
XM_007237093.2 mRNA upstream 98979 9780471 ~ 9783136 (+) True LOC103038615
XM_007237082.3 mRNA upstream 188826 9685357 ~ 9693289 (+) True LOC103035797
XM_022671319.1 mRNA upstream 242835 9618666 ~ 9639280 (+) True LOC103035489
XM_022671316.1 mRNA upstream 458834 9364591 ~ 9423281 (+) False phf21b
XM_007237086.3 mRNA downstream 4942 9889217 ~ 9898004 (+) True LOC103036813
XM_022671320.1 mRNA downstream 16210 9900485 ~ 9925895 (+) True LOC103038308
XM_007237091.3 mRNA downstream 45233 9929508 ~ 9945834 (+) False usp15
XM_007237087.3 mRNA downstream 45253 9929528 ~ 9967291 (+) True usp15
XM_007237088.3 mRNA downstream 45253 9929528 ~ 9967291 (+) False usp15
TU85065 other upstream 232028 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 441551 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 1341992 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 1348883 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 3026353 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 2583775 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2775173 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 3271951 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4860460 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 6537959 16422234 ~ 16426613 (+) False arid2

Expression Profile