RNA id: TU85141



Basic Information


Item Value
RNA id TU85141
length 286
lncRNA type inter_gene
GC content 0.52
exon number 4
gene id G63093
representative True

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9991758 ~ 9998972 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GTCAGGTTATACACCCTCACCTCTGGACAGCAGGACAGAAACGGTTTAATGTAGATGTTGGAGTCATGGACTTTGAGGTCATGGTCTCCTAGACCACGGGTCACTCCTATTGTGGCCATCACTCGAGCCTTCTTCCCCTCGCCGTATATTAAGGGGAATCTGAGGTCTTCATCCTCGATGGTTTTGTACGCCCAGCCGGTCATGGTGAAGTCCCGATACAGCATCTTCTTCCCCACTTCCTTCCTCTGTACTCTCCTCGGGAACTCCAGGTGTGTGAACTCTCCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85139 lncRNA upstream 7030 9980518 ~ 9984728 (+) True G63091
TU85138 lncRNA upstream 15647 9972252 ~ 9976111 (+) True G63090
TU85101 lncRNA upstream 107483 9882115 ~ 9884275 (+) True G63081
TU85086 lncRNA upstream 125257 9810872 ~ 9866501 (+) True G63067
TU85064 lncRNA upstream 347247 9642481 ~ 9644511 (+) True G63050
TU85149 lncRNA downstream 74142 10073114 ~ 10073399 (+) True G63101
TU85151 lncRNA downstream 78707 10077679 ~ 10077996 (+) True G63103
TU85261 lncRNA downstream 219702 10218674 ~ 10218940 (+) True G63193
TU85262 lncRNA downstream 220587 10219559 ~ 10219895 (+) True G63194
TU85267 lncRNA downstream 248735 10247707 ~ 10248031 (+) True G63199
XM_007237087.3 mRNA upstream 24467 9929528 ~ 9967291 (+) True usp15
XM_022671324.1 mRNA downstream 43231 10042203 ~ 10070882 (+) True il17rel
XM_015601062.2 mRNA downstream 311469 10310441 ~ 10316421 (+) True pim3
XM_007232396.2 mRNA downstream 410049 10409021 ~ 10420809 (+) True alg12
XM_022671327.1 mRNA downstream 441042 10440014 ~ 10464718 (+) True brd1
XM_022671328.1 mRNA downstream 441042 10440014 ~ 10464718 (+) False brd1
TU85065 other upstream 341671 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 551194 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 1451635 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 1458526 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 3135996 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 2469078 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2660476 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 3157254 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4745763 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 6423262 16422234 ~ 16426613 (+) False arid2

Expression Profile