RNA id: TU85149


Basic Information

Item Value
RNA id TU85149
length 286
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G63101
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 10073114 ~ 10073399 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttctttttggaaggccctgcctctgctttccctgcctccgccatgatctgctttctctcactcactgaacaattcccgtccgggaggggggaaaaacactgcccgcccacactaaaaactgattggctgtctcacagactctttgcagagaacaggccaatcagaaccctctctgttttctctctctccttcccacactcgattagagaaaaaaagtctgtcgcctgtgtgcgcgtttgtgtgcagtgcactcttggggcactcgttctgaattccgggagatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85141 lncRNA upstream 74142 9991758 ~ 9998972 (+) True G63093
TU85139 lncRNA upstream 88386 9980518 ~ 9984728 (+) True G63091
TU85138 lncRNA upstream 97003 9972252 ~ 9976111 (+) True G63090
TU85101 lncRNA upstream 188839 9882115 ~ 9884275 (+) True G63081
TU85086 lncRNA upstream 206613 9810872 ~ 9866501 (+) True G63067
TU85151 lncRNA downstream 4280 10077679 ~ 10077996 (+) True G63103
TU85261 lncRNA downstream 145275 10218674 ~ 10218940 (+) True G63193
TU85262 lncRNA downstream 146160 10219559 ~ 10219895 (+) True G63194
TU85267 lncRNA downstream 174308 10247707 ~ 10248031 (+) True G63199
XR_002650153.1 lncRNA downstream 273561 10346960 ~ 10353740 (+) True LOC111192872
XM_022671324.1 mRNA upstream 2232 10042203 ~ 10070882 (+) True il17rel
XM_007237087.3 mRNA upstream 105823 9929528 ~ 9967291 (+) True usp15
XM_015601062.2 mRNA downstream 237042 10310441 ~ 10316421 (+) True pim3
XM_007232396.2 mRNA downstream 335622 10409021 ~ 10420809 (+) True alg12
XM_022671327.1 mRNA downstream 366615 10440014 ~ 10464718 (+) True brd1
XM_022671328.1 mRNA downstream 366615 10440014 ~ 10464718 (+) False brd1
XM_022671330.1 mRNA downstream 366615 10440014 ~ 10462751 (+) False brd1
TU85065 other upstream 423027 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 632550 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 1532991 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 1539882 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 3217352 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 2394651 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2586049 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 3082827 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4671336 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 6348835 16422234 ~ 16426613 (+) False arid2

Expression Profile