RNA id: TU85151


Basic Information

Item Value
RNA id TU85151
length 318
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G63103
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 10077679 ~ 10077996 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCACGATTTCAtgtatttcgtttgtttatttactctccTTGTGTTTATCCTGTGTCTCCTCCCCTGTGGCCTACCTgttttgtagctccgccctctcttcccaggtgtttcctgtttctagTCTGTGTCCGTTGGTATAAATAGTCCCCCTCTACTGGTTACCTTCGTCCGTGATTGTGCGTTGTTGACGTCAGTCAGGTTTCGTGATCCCCGTGTTTTCTCTgatctgtttcttgtttttcttttatgtatGTTAATAAATGTAACTCGCACTTGCGTCCGCCTCTGCGTCCTCTCCCTGTTCCTGCACCTGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85149 lncRNA upstream 4280 10073114 ~ 10073399 (+) True G63101
TU85141 lncRNA upstream 78707 9991758 ~ 9998972 (+) True G63093
TU85139 lncRNA upstream 92951 9980518 ~ 9984728 (+) True G63091
TU85138 lncRNA upstream 101568 9972252 ~ 9976111 (+) True G63090
TU85101 lncRNA upstream 193404 9882115 ~ 9884275 (+) True G63081
TU85261 lncRNA downstream 140678 10218674 ~ 10218940 (+) True G63193
TU85262 lncRNA downstream 141563 10219559 ~ 10219895 (+) True G63194
TU85267 lncRNA downstream 169711 10247707 ~ 10248031 (+) True G63199
XR_002650153.1 lncRNA downstream 268964 10346960 ~ 10353740 (+) True LOC111192872
TU85330 lncRNA downstream 471351 10549347 ~ 10549622 (+) True G63244
XM_022671324.1 mRNA upstream 6797 10042203 ~ 10070882 (+) True il17rel
XM_007237088.3 mRNA upstream 110388 9929528 ~ 9967291 (+) False usp15
XM_015601062.2 mRNA downstream 232445 10310441 ~ 10316421 (+) True pim3
XM_007232396.2 mRNA downstream 331025 10409021 ~ 10420809 (+) True alg12
XM_022671327.1 mRNA downstream 362018 10440014 ~ 10464718 (+) True brd1
XM_022671328.1 mRNA downstream 362018 10440014 ~ 10464718 (+) False brd1
XM_022671330.1 mRNA downstream 362018 10440014 ~ 10462751 (+) False brd1
TU85065 other upstream 427592 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 637115 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 1537556 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 1544447 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 3221917 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 2390054 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2581452 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 3078230 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4666739 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 6344238 16422234 ~ 16426613 (+) False arid2

Expression Profile