RNA id: TU85261


Basic Information

Item Value
RNA id TU85261
length 267
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G63193
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 10218674 ~ 10218940 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACAgattattgaaaattcatgaaacttggcaaaaacacaaaagacatcattacacacattttcagcattggtaggactgactccgcccaacaggaagtcggccattttgaaatatctgcattttacacacattttttgtgtatattgtcaaactactcctagcaaATTTGTTGAATtttcttggtatttggtaaaaataaacattgaacatatctgatgataaattgtgaaggaatagtcgatatctcaaacgaggacgaaatggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85151 lncRNA upstream 140678 10077679 ~ 10077996 (+) True G63103
TU85149 lncRNA upstream 145275 10073114 ~ 10073399 (+) True G63101
TU85141 lncRNA upstream 219702 9991758 ~ 9998972 (+) True G63093
TU85139 lncRNA upstream 233946 9980518 ~ 9984728 (+) True G63091
TU85138 lncRNA upstream 242563 9972252 ~ 9976111 (+) True G63090
TU85262 lncRNA downstream 619 10219559 ~ 10219895 (+) True G63194
TU85267 lncRNA downstream 28767 10247707 ~ 10248031 (+) True G63199
XR_002650153.1 lncRNA downstream 128020 10346960 ~ 10353740 (+) True LOC111192872
TU85330 lncRNA downstream 330407 10549347 ~ 10549622 (+) True G63244
TU85332 lncRNA downstream 345756 10564696 ~ 10565793 (+) True G63246
XM_022671324.1 mRNA upstream 147792 10042203 ~ 10070882 (+) True il17rel
XM_007237088.3 mRNA upstream 251383 9929528 ~ 9967291 (+) False usp15
XM_015601062.2 mRNA downstream 91501 10310441 ~ 10316421 (+) True pim3
XM_007232396.2 mRNA downstream 190081 10409021 ~ 10420809 (+) True alg12
XM_022671327.1 mRNA downstream 221074 10440014 ~ 10464718 (+) True brd1
XM_022671328.1 mRNA downstream 221074 10440014 ~ 10464718 (+) False brd1
XM_022671330.1 mRNA downstream 221074 10440014 ~ 10462751 (+) False brd1
TU85065 other upstream 568587 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 778110 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 1678551 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 1685442 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 3362912 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 2249110 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2440508 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 2937286 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4525795 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 6203294 16422234 ~ 16426613 (+) False arid2

Expression Profile