RNA id: TU85262


Basic Information

Item Value
RNA id TU85262
length 337
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G63194
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 10219559 ~ 10219895 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgacacggtcagaaaacagattattgaaaattcatgaaacttggcaaaaacacaaaagacatcattacacacattttcagcattggtaggactgactccgcccaacaggaagtcggccattttgaaatatctgcattttacacacattttttgtgtatattgtcaaactactcctagcaaatttgttgaattctcttggtatttggtaaaaaataaacattgaacatatctgatgataaattgtgaaggaatagtcgatatctcaaacgaggacgaaatggcagaTGGTTGAATTTGTGAGATGCCACATCAAAACAGGAGGTCAAAACCTAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85261 lncRNA upstream 619 10218674 ~ 10218940 (+) True G63193
TU85151 lncRNA upstream 141563 10077679 ~ 10077996 (+) True G63103
TU85149 lncRNA upstream 146160 10073114 ~ 10073399 (+) True G63101
TU85141 lncRNA upstream 220587 9991758 ~ 9998972 (+) True G63093
TU85139 lncRNA upstream 234831 9980518 ~ 9984728 (+) True G63091
TU85267 lncRNA downstream 27812 10247707 ~ 10248031 (+) True G63199
XR_002650153.1 lncRNA downstream 127065 10346960 ~ 10353740 (+) True LOC111192872
TU85330 lncRNA downstream 329452 10549347 ~ 10549622 (+) True G63244
TU85332 lncRNA downstream 344801 10564696 ~ 10565793 (+) True G63246
TU85343 lncRNA downstream 410233 10630128 ~ 10630473 (+) True G63254
XM_022671324.1 mRNA upstream 148677 10042203 ~ 10070882 (+) True il17rel
XM_007237088.3 mRNA upstream 252268 9929528 ~ 9967291 (+) False usp15
XM_015601062.2 mRNA downstream 90546 10310441 ~ 10316421 (+) True pim3
XM_007232396.2 mRNA downstream 189126 10409021 ~ 10420809 (+) True alg12
XM_022671327.1 mRNA downstream 220119 10440014 ~ 10464718 (+) True brd1
XM_022671328.1 mRNA downstream 220119 10440014 ~ 10464718 (+) False brd1
XM_022671330.1 mRNA downstream 220119 10440014 ~ 10462751 (+) False brd1
TU85065 other upstream 569472 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 778995 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 1679436 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 1686327 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 3363797 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 2248155 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2439553 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 2936331 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4524840 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 6202339 16422234 ~ 16426613 (+) False arid2

Expression Profile