RNA id: TU85330


Basic Information

Item Value
RNA id TU85330
length 276
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G63244
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 10549347 ~ 10549622 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagagtctaaaagcggagagggtgcgcatttctagcacagaaaaacgggcaaaagagtctaaaagtggagagagtgcgcatttctagcacagaaaaacgggcaaaagagtctaaaagcggagagagtgtgcatttctagcacagaaaaacgggcaaaagagtctaaaagtggagagagtgcgcatttctagcgcagaaaaacgggcaaaagagtctaaaagcggagagagtgtgcatttctagtgcagaaaaacgggccaaagagtctaaaagcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650153.1 lncRNA upstream 195607 10346960 ~ 10353740 (+) True LOC111192872
TU85267 lncRNA upstream 301316 10247707 ~ 10248031 (+) True G63199
TU85262 lncRNA upstream 329452 10219559 ~ 10219895 (+) True G63194
TU85261 lncRNA upstream 330407 10218674 ~ 10218940 (+) True G63193
TU85151 lncRNA upstream 471351 10077679 ~ 10077996 (+) True G63103
TU85332 lncRNA downstream 15074 10564696 ~ 10565793 (+) True G63246
TU85343 lncRNA downstream 80506 10630128 ~ 10630473 (+) True G63254
TU85349 lncRNA downstream 1081020 11630642 ~ 11635507 (+) False G63260
TU85350 lncRNA downstream 1081020 11630642 ~ 11635507 (+) True G63260
TU85351 lncRNA downstream 1081020 11630642 ~ 11635507 (+) False G63260
XM_022671327.1 mRNA upstream 84629 10440014 ~ 10464718 (+) True brd1
XM_022671328.1 mRNA upstream 84629 10440014 ~ 10464718 (+) False brd1
XM_022671329.1 mRNA upstream 84629 10440015 ~ 10464718 (+) False brd1
XM_022671330.1 mRNA upstream 86596 10440014 ~ 10462751 (+) False brd1
XM_022671331.1 mRNA upstream 91764 10440014 ~ 10457583 (+) False brd1
XM_022671343.1 mRNA downstream 1430749 11980371 ~ 11986784 (+) True LOC103028484
XM_007234936.3 mRNA downstream 1440978 11990600 ~ 11997857 (+) True alg10
XM_022671347.1 mRNA downstream 1811562 12361184 ~ 12373369 (+) True c7h12orf40
XM_022671348.1 mRNA downstream 1811562 12361184 ~ 12373369 (+) False c7h12orf40
XM_022671350.1 mRNA downstream 1811562 12361184 ~ 12373369 (+) False c7h12orf40
TU85065 other upstream 899260 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 1108783 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 2009224 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 2016115 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 3693585 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 1918428 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2109826 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 2606604 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4195113 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 5872612 16422234 ~ 16426613 (+) False arid2

Expression Profile