RNA id: TU85332


Basic Information

Item Value
RNA id TU85332
length 1098
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G63246
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 10564696 ~ 10565793 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctagattattgtaatgcgctactgtctggatgttccggcagtaacttaaataaacttcagctagttcaaaatgctgcagccagggtccttactaaaactagaaaatttgagcatattagtccagtactatcagcactgcattggcttccagtcaaattccgcatagactataaaattctcctgttaacgtataaagccctacacgggctcgctcctgagtatttacgagacctcatctcctattatgaaccaccgcgattacttagatctcagggtgctggtttattagtagttcctaaaattcagaggagctctgcaggaggaagagctttctcttataaagcgcctcaactctggaataatctccccgaatatgttcgggactcagacacagtctcaatctttaagtctagactgaaaacttacttgtttagtttagcttttggtaattaatgtttttccctttagataaggctgcagattcaggggttcatggacagagggaattgtggtaaactgagatgctggtgctgctgttctcccactgcacacggtcactcaggtttgtggacggtggagtgggtggatgccagtgtttcagggagcctccatgtctatgttaccttctggctctctgcctttagttaggctgttttatttagatctgccggagtcattagccacactctgataatgttttatattctctgttttacataaatccagtcaaaactaattccatctctctgccttcctccgagttactgactgcccacctgtctgacccgataccgatggatgttggaccctcaggctctcatgtcctctgtctggccagactggaagtttctgaagtcagctcttctccatccaccaccacagatcagctgctcatcatccatcttactctataagccattagtggagctgctatacatctgaatatataaaacctatgactttttaaaattaatttaaaagccattgaccagtggtaggatggtcccccctttaatgtgagtcttggtcctcccaaggtttcttcctcctcctgcagctctgagggagtttttccttgcctccgcgctcactggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85330 lncRNA upstream 15074 10549347 ~ 10549622 (+) True G63244
XR_002650153.1 lncRNA upstream 210956 10346960 ~ 10353740 (+) True LOC111192872
TU85267 lncRNA upstream 316665 10247707 ~ 10248031 (+) True G63199
TU85262 lncRNA upstream 344801 10219559 ~ 10219895 (+) True G63194
TU85261 lncRNA upstream 345756 10218674 ~ 10218940 (+) True G63193
TU85343 lncRNA downstream 64335 10630128 ~ 10630473 (+) True G63254
TU85349 lncRNA downstream 1064849 11630642 ~ 11635507 (+) False G63260
TU85350 lncRNA downstream 1064849 11630642 ~ 11635507 (+) True G63260
TU85351 lncRNA downstream 1064849 11630642 ~ 11635507 (+) False G63260
TU85352 lncRNA downstream 1064849 11630642 ~ 11635507 (+) False G63260
XM_022671327.1 mRNA upstream 99978 10440014 ~ 10464718 (+) True brd1
XM_022671343.1 mRNA downstream 1414578 11980371 ~ 11986784 (+) True LOC103028484
XM_007234936.3 mRNA downstream 1424807 11990600 ~ 11997857 (+) True alg10
XM_022671347.1 mRNA downstream 1795391 12361184 ~ 12373369 (+) True c7h12orf40
XM_022671348.1 mRNA downstream 1795391 12361184 ~ 12373369 (+) False c7h12orf40
XM_022671350.1 mRNA downstream 1795391 12361184 ~ 12373369 (+) False c7h12orf40
TU85065 other upstream 914609 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 1124132 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 2024573 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 2031464 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 3708934 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 1902257 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2093655 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 2590433 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4178942 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 5856441 16422234 ~ 16426613 (+) False arid2

Expression Profile