RNA id: TU85336


Basic Information

Item Value
RNA id TU85336
length 952
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G63247
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 10564675 ~ 10565626 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagctccactaatggcttatagagtaagatggatgatgagcagctgatctgtggtggtggatggagaagagctgacttcagaaacttccagtctggccagacagaggacatgagagcctgagggtccaacatccatcggtatcgggtcagacaggtgggcagtcagtaactcggaggaaggcagagagatggaattagttttgactggatttatgtaaaacagagaatataaaacattatcagagtgtggctaatgactccggcagatctaaataaaacagcctaactaaaggcagagagccagaaggtaacatagacatggaggctccctgaaacactggcatccacccactccaccgtccacaaacctgagtgaccgtgtgcagtgggagaacagcagcaccagcatctcagtttaccacaattccctctgtccatgaacccctgaatctgcagccttatctaaagggaaaaacattaattaccaaaagctaaactaaacaagtaagttttcagtctagacttaaagattgagactgtgtctgagtcccgaacatattcggggagattattccagagttgaggcgctttataagagaaagctcttcctcctgcagagctcctctgaattttaggaactactaataaaccagcaccctgagatctaagtaatcgcggtggttcataataggagatgaggtctcgtaaatactcaggagcgagcccgtgtagggctttatacgttaacaggagaattttatagtctatgcggaatttgactggaagccaatgcagtgctgatagtactggactaatatgctcaaattttctagttttagtaaggaccctggctgcagcattttgaactagctgaagtttatttaagttactgccggaacatccagacagtagcgcattacaataatctagccttgaggtaataaaggcatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85293 lncRNA downstream 248161 10314799 ~ 10316514 (-) True G63217
TU85296 lncRNA downstream 250042 10312758 ~ 10314633 (-) True G63219
TU85258 lncRNA downstream 369889 10194576 ~ 10194786 (-) True G63190
TU85257 lncRNA downstream 377248 10187172 ~ 10187427 (-) True G63189
TU85251 lncRNA downstream 429326 10134196 ~ 10135349 (-) True G63183
TU85337 lncRNA upstream 24720 10590346 ~ 10590610 (-) True G63248
TU85344 lncRNA upstream 64503 10630129 ~ 10630460 (-) True G63255
TU85348 lncRNA upstream 92578 10658204 ~ 10658424 (-) True G63259
TU85370 lncRNA upstream 1065016 11630642 ~ 11635515 (-) False G63265
TU85365 lncRNA upstream 1067024 11632650 ~ 11635515 (-) True G63265
XM_007232394.3 mRNA downstream 131221 10424589 ~ 10433454 (-) False zbed4
XM_007232395.3 mRNA downstream 131532 10424589 ~ 10433143 (-) True zbed4
XM_007232393.3 mRNA downstream 158803 10394930 ~ 10405872 (-) True creld2
XM_007232390.3 mRNA downstream 532004 9986304 ~ 10032671 (-) True LOC103042295
XM_007237085.3 mRNA downstream 677187 9865360 ~ 9887488 (-) False LOC103036113
XM_022671332.1 mRNA upstream 1158841 11724467 ~ 11779849 (-) False LOC103026034
XM_022671333.1 mRNA upstream 1158841 11724467 ~ 11759456 (-) True LOC103026034
XM_022671334.1 mRNA upstream 1214929 11780555 ~ 11805577 (-) True LOC111192951
XM_022671342.1 mRNA upstream 1259220 11824846 ~ 11965807 (-) False LOC103026753
XM_022671341.1 mRNA upstream 1259220 11824846 ~ 11965807 (-) False LOC103026753
TU85294 other downstream 153444 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 941887 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 2390873 8166678 ~ 8173802 (-) False LOC111192870
TU84255 other downstream 3826727 6671610 ~ 6737948 (-) False G62484
TU85708 other upstream 1754929 12320555 ~ 12365739 (-) True G63516
TU86395 other upstream 4219695 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 4428538 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 6019439 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 6316709 16882335 ~ 16887903 (-) False G64492

Expression Profile