RNA id: TU85343


Basic Information

Item Value
RNA id TU85343
length 346
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G63254
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 10630128 ~ 10630473 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtttttctttctcgttttctggctttcacagacacattcggtctctttccagcttctgccagagtgtctgtatgttagtttgtaaagaatgaaccagtagtccttgtagaactgttagaactaaaggtcggaaagcaggttgcagttcttacaagcgttggtcgcggccgcctcggaaaacttacagagtctggtttgagctcagaggagctccggcacagacacgagagcaccactattcctcctattacacctcaatgcagcgctgcagtgagtttcaagctgtaattttacttctttaaaaagatcaaaaatcaaggaaatcctacctagtgctgctttaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85332 lncRNA upstream 64335 10564696 ~ 10565793 (+) True G63246
TU85330 lncRNA upstream 80506 10549347 ~ 10549622 (+) True G63244
XR_002650153.1 lncRNA upstream 276388 10346960 ~ 10353740 (+) True LOC111192872
TU85267 lncRNA upstream 382097 10247707 ~ 10248031 (+) True G63199
TU85262 lncRNA upstream 410233 10219559 ~ 10219895 (+) True G63194
TU85349 lncRNA downstream 1000169 11630642 ~ 11635507 (+) False G63260
TU85350 lncRNA downstream 1000169 11630642 ~ 11635507 (+) True G63260
TU85351 lncRNA downstream 1000169 11630642 ~ 11635507 (+) False G63260
TU85352 lncRNA downstream 1000169 11630642 ~ 11635507 (+) False G63260
TU85355 lncRNA downstream 1000169 11630642 ~ 11635507 (+) False G63260
XM_022671327.1 mRNA upstream 165410 10440014 ~ 10464718 (+) True brd1
XM_022671343.1 mRNA downstream 1349898 11980371 ~ 11986784 (+) True LOC103028484
XM_007234936.3 mRNA downstream 1360127 11990600 ~ 11997857 (+) True alg10
XM_022671347.1 mRNA downstream 1730711 12361184 ~ 12373369 (+) True c7h12orf40
XM_022671348.1 mRNA downstream 1730711 12361184 ~ 12373369 (+) False c7h12orf40
XM_022671350.1 mRNA downstream 1730711 12361184 ~ 12373369 (+) False c7h12orf40
TU85065 other upstream 980041 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 1189564 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 2090005 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 2096896 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 3774366 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 1837577 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2028975 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 2525753 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4114262 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 5791761 16422234 ~ 16426613 (+) False arid2

Expression Profile