RNA id: TU85355


Basic Information

Item Value
RNA id TU85355
length 4484
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G63260
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 11630642 ~ 11635546 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATCAAGCTGTTTGCGAGAGGGATCGAAGAGCAGTCTGTCTTTGAGGACCCTTCTTACGCTCTCAACGCTATATAGATCTGCCTGTCAAAATCACTGGAAGAAAATATCCACTCTCACTGGACCATGAAGAAACTCAACCCTTTGAAAAGAGGTCACATTCGGGTTAGAGTTAACAAGATGCTGTTCCATATGCTGTTGGACcaatttgtagtttatagaattggAAGGAACTTCTTTAGATTCTGACATGTACACCACAGTGGAGTTGCTAGCAGCTCAGGCTGTTTTTGTTGAACTCTTGATTTACAGTGTAGCATTGCTCTACATTCCACATTGACTTGTGGACCATTTAGGATTTCACCTACactcactgaaataaaggtgcttcaaatggttctttgagagATACTGTAGAGCCAAGGTCATCAAATGTGGACATTGAATTCTTCTTCCAGTCATGGATCTCAGTGAAAGTTCACTATGAGGCGGTTTCTCTGAGCCTAACCGTTTACTATGTTTTTCTTTGATGAGAAATCACCTTTCAGAATGCTGTGTCGTACAAGATTGTCACAATAGGCACACCTACAAAGGGTACCAAGTCCAAGACTGGAAACTGGATCCATGAACTAAAATTTGTAAATCTCTGCTTAGATTTGAGAATCAGAGATTCTTCATTCTGCAACTATACTTAAGTAGATTCTTCTTTAAACTCAATAATGCGGTTTTTGCAAAGACTAGATAGTGGGGTCGGTCATCTTTATAGGAGAAGAGCAGTGCTTGGTAAAAGTATCTCATGCCACTTTTAccaacttgttttttgttttgttttttttttactggtgcTTTTCCACTGAATGGTACctaaactacttgacttgattcGATTTTTTTTCTACCCAAAATGTAGCTGGGGATGTCTTGGCTCTCACTGGATTCATTTGCATTACTTTCCATGAATCCTGTTTTTACAATGCATTTTGaatgtttataatgtattatttggCATACTTAAACCATATAATGATTGTTATAAACGTGCATACACATGGCAACACAtgcatttttgaaaaaaagtatAAGTATGTGACTTTATAAAGAAACGTGACTTTTAAAGAAGAAAGTTATATTCTTCTATTTATAAGGTCTTATGTACAGCTTATGACTgttattataaggtattatgtatGACCTGATTAATTATAATTGCACTCATGATACATTATGAATGCAGGATTCTAAGGTTTGCTGGCAAACAAAAAGTCACATAGAGAGTTGGTACTGTAAAACTATCTGGGTCAAGTAGCATAGAGACCTTGCGCAACAAATTCCATATGGCATATggctcaaagaaccatttaaaacagcttaatttttaagagtgtaggcATCAGTATTGCTGATTTGTGCTCCTCTTAAGAGTGTTCATAATAGATTTCTTATTTATAAGCGTGACCAAGATGCTAGTCATTGCTCCTGCTGTAATACATCAGCGTTCAGCAGTCTTCCTCTGCAGTCAAGCTGGTCTTGATCGACAGTAGCATTAGTTGTGTTCCAACATTGGAAAATGCAACTCGCAACTTTAGGGAATTTATTTGACTTTCTTAGAAGTACAAGACTCAAGGTTATCCAGTCATAGACATATTCTATATTGCTGCAGTATAATAGGATACTTATTATATGTAGATTATCTGCTGGaacttgtgttttgtttttgttgctgttATTATGTAAGCATGAAGTGAGTAGCAATCCAACACTGGGACACAATGTAGCTGATATCTATTCCTTAATGTCCTAAAGCTTCATGCTGCGGATGTTATTTTTCACCATGAGTTATATCATGCTTTGGGAACTATGACAAACCATACTCCAAATATCAGGTACCGCCAGGAGATGTTTGAGTAACTAAGGCTCTGTTTATATGTATctgaattcagtgtttttaaaacgtttccaAATTATATATAGATATCACAACATATGCATGTTTACTCTCTGATTGTGTAAGTCAGAGAACTATGTTGTCTACACACAGATTGCACTAGATCTCACATTTCAACATACAAGACTAGCATGCTAATGTTTTTGGTTCTCTTTGTGGACAAATATGTTTATGACCAAGACATGTTAAGTCcaggtcaagaccaagacctttAGTTGACGGGTGCGAGTCAAGACCAACTCTTTTAGTAGCTGTGTCCAACTCAGGACCAAGATTTTACTAATGAAGTCTGACTCAAGACCAAAACTTTTAGTAATCAAGTCTGactcaagaccaagacttttagtaatcAAGTCCGATTCAAGACCAAGATTTTACTAATCGAGTCTGactcaagaccaagacttttagtagtcaagtctgacTCAAGACTTGTTTAAATCCGAGTCAAGTCCAATACTTTTAGTAATCAgttctgagtcaagaccaagacttttagtagtcttGTCTGACTCAAGACTTTGTAGTCaaatctgagtcaagaccaagatctGGTAGTCAAATCCgggtcaagaccaagacttttagtaatcaaatccgagtcaagaccaagaccagattaagatattttacaacatttaataaatagaaaacaatgagaaagtaaaaataatatactgtGTAACTCATTGTGCGTCCAGTATCAATCGTTATAATcttaatatttcattatatcTATAAAAGATACTCAAGACCAGACTTACATTTGCAATCATATTAGACAAACAAAGGAAAATGAGTCTCAACTCATTCAGTTATAGCTGGACTTGCAGCTTTGTTGgggcatatatatatttttattatcatgCATGACTCTGCACAGCCctagtctctctttctcgctctctctctctctttttaaatgGAGTTGTCCACTTGACTGTAGTAGATAATCTACTATGGCTGCCTCTCCTTTAGCCTATAGTCCTCCTGTGCATCAGCCTCTCAGGACCTCTGCTGCCCTTTATTGCTGTtgtatcttcttcttcttcttcttcttttgcttGAATGTCTTATTTCTCTCTGTTGTATTTCTGTAATGATATAAAAGCCACAGGCCCTGTTGTTGTTGCAGGGCTTCTGCTGGAGGTTTTATGTGTGTAATCTAAGCTTGTGTTGTTGGTTCAGCGTCAGGGGACTTTGAGCGGTCTGTGATTTAGTGAAATTGCTTCTTGTCCGTAacacatctgctgctgtttgtggAATTTCGCGAAGCCGAAGTGGAGTGGCAATCGAGTCATGGTCGCACTCGCACGGTCCTAATGTGGCACGTAGGTTTTGTAAATCATTATCCTGAAGTCTACGCCTTGTGCAATTCAAGTGTAAAGGAGCTGGAGTAGTGGACGCTAATGCTGGCAGTCAATCGTGGGCCGCAAATCttatgtgttagtgtgtgagtcgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatgtgtgcacACACAGAATTGCCCTCATCTCAGCCATCTGACAGCTGCTGTGTTTGGCAGCCTGGTTCAGGGCCAATCAGACACTTACATGCCCATATGCATCAACCGCTGTGACAACAaacctccagctccagcacacAGATCCCTCCGCCGACTCCATCTGAACCAGAGGCGTAATTCAAAATCCTCTCAAAAGCCCCTCGTAAATATCACTGCCATGTCTGCTCTCTGGCTTTCAGCACAGcggctgctgctcctgctgctgccgctAACTTACAGCCCAGCCTGATTGACTGACAAGGCCGCTCACTGTCCAGTTCTCCAAGAAGTCTTGGGCCATCAGATACAATGGAATTCCCTTAAAATTATTACTAAAGTTCAGCAAGACAGGAAAAGTCATTTAGATTGGTTTTGGAATAACAGATTTATtaacagcatttctcccaaattccaaataaaaaatattgttatttagagcatttatctgcagaaataaaaaaatggctgaaataacaaaaaaaaaatccagcgctttcagacctcaaataaaaaaaagttttaagagttcagaaatgaacTCAATGAAAtgagcatgttctcctccaccagtcttacactctgattttggataactttatgctttacactcctggtgcaaaaagtcaagcagtttagtttggtttgatggcttgtgatcatccatctccctcttgattatattccagaggttttcaatttggtaaatcaaagaaactcatcatttttaagtggcctcttatttttttccagagctgtataatacaaTCTCAGTAGCTGCCAGTAGCTGTTACCACCCCAGTAGTGATCACTGTGAGCAACACCACCCCTCCCGCCGATATGCTGCTGCTTATTAGCAAAGCCGCAGCCTTGACTGAAAACAATATCCAAAAACAATCATCTTGCAGGCTTTGAGATGACACGGAGTGATGTATGACCTGATATATTGAATTTGATGAGtgttgagaaaaaaacaaggaacaaaATGCTTAATAAAGTTCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85343 lncRNA upstream 1000169 10630128 ~ 10630473 (+) True G63254
TU85332 lncRNA upstream 1064849 10564696 ~ 10565793 (+) True G63246
TU85330 lncRNA upstream 1081020 10549347 ~ 10549622 (+) True G63244
XR_002650153.1 lncRNA upstream 1276902 10346960 ~ 10353740 (+) True LOC111192872
TU85267 lncRNA upstream 1382611 10247707 ~ 10248031 (+) True G63199
TU85379 lncRNA downstream 65911 11701418 ~ 11701706 (+) True G63268
TU85380 lncRNA downstream 82515 11718022 ~ 11718542 (+) True G63269
TU85397 lncRNA downstream 175649 11811156 ~ 11811590 (+) True G63285
TU85415 lncRNA downstream 321378 11956885 ~ 11975553 (+) True G63303
TU85449 lncRNA downstream 351491 11986998 ~ 11990396 (+) True G63328
XM_022671327.1 mRNA upstream 1165924 10440014 ~ 10464718 (+) True brd1
XM_022671343.1 mRNA downstream 344864 11980371 ~ 11986784 (+) True LOC103028484
XM_007234936.3 mRNA downstream 355093 11990600 ~ 11997857 (+) True alg10
XM_022671347.1 mRNA downstream 725677 12361184 ~ 12373369 (+) True c7h12orf40
XM_022671348.1 mRNA downstream 725677 12361184 ~ 12373369 (+) False c7h12orf40
XM_022671350.1 mRNA downstream 725677 12361184 ~ 12373369 (+) False c7h12orf40
TU85065 other upstream 1980555 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 2190078 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 3090519 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 3097410 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 4774880 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 832543 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 1023941 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 1520719 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 3109228 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 4786727 16422234 ~ 16426613 (+) False arid2

Expression Profile