RNA id: TU85365


Basic Information

Item Value
RNA id TU85365
length 2811
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G63265
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 11630642 ~ 11635515 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTGGTTTCATGAACTTTATTAAGCATtttgttccttgtttttttctcaacaCTCATCAAATTCAATATATCAGGTCATACATCACTCCGTGTCATCTCAAAGCCTGCAAGATGATTGTTTTTGGATATTGTTTTCAGTCAAGGCTGCGGCTTTGCTAATAAGCAGCAGCATATCGGCGGGAGGGGTGGTGTTGCTCACAGTGATCACTACTGGGGTGGTAACAGCTACTGGCAGCTACTGAGAttgtattatacagctctggaaaaaaataagaggccacttaaaaatgatgagtttctttgatttaccaaattgaaaacctctggaatataatcaagagggagatggatgatcacaagccatcaaaccaaactaaactgcttgactttttgcaccaggagtgtaaagcataaagttatccaaaatcagagtgtaagactggtggaggagaacatgctcaTTTCATTGAgttcatttctgaactcttaaaacttttttttatttgaggtctgaaagcgctggattttttttttgttatttcagccatttttttatttctgcagataaatgctctaaataacaatattttttatttggaatttgggagaaatgctgttaATAAATCTGTTATTCCAAAACCAATCTAAATGACTTTTCCTGTCTTGCTGAACTTTAGTAATAATTTTAAGGGAATTCCATTGTATCTGATGGCCCAAGACTTCTTGGAGAACTGGACAGTGAGCGGCCTTGTCAGTCAATCAGGCTGcaggagcagcagccgCTGTGCTGAAAGCCAGAGAGCAGACATGGCAGTGATATTTACGAGGGGCTTTTGAGAGGATTTTGAATTACGCCTCTGGTTCAGATGGAGTCGGCGGAGGGATCTgtgtgctggagctggaggttTGTTGTCACAGCGGTTGATGCATATGGGCATGTAAGTGTCTGATTGGCCCTGAACCAGGCTGCCAAACACAGCAGCTGTCAGATGGCTGAGATGAGGGCAATTCTGTGTgtgcacacatatatatatacacacacacacacacacacacacacacacatcgactcacacactaacacataaGATTTGCGGCCCACGATTGACTGCCAGCATTAGCGTCCACTACTCCAGCTCCTTTACACTTGAATTGCACAAGGCGTAGACTTCAGGATAATGATTTACAAAACCTACGTGCCACATTAGGACCGTGCGAGTGCGACCATGACTCGATTGCCACTCCACTTCGGCTTCGCGAAATTccacaaacagcagcagatgtgtTACGGACAAGAAGCAATTTCACTAAATCACAGACCGCTCAAAGTCCCCTGACGCTGAACCAACAACACAAGCTTAGATTACACACATAAAACCTCCAGCAGAAGCCCTGCAACAACAACAGGGCCTGTGGCTTTTATATCATTACAGAAATACAACAGAGAGAAATAAGACATTCaagcaaaagaagaagaagaagaagaagatacaACAGCAATAAAGGGCAGCAGAGGTCCTGAGAGGCTGATGCACAGGAGGACTATAGGCTAAAGGAGAGGCAGCCATAGTAGATTATCTACTACAGTCAAGTGGACAACTCcatttaaaaagagagagagagagcgagaaagagagactagGGCTGTGCAGAGTCATGcatgataataaaaatatatatatgcccCAACAAAGCTGCAAGTCCAGCTATAACTGAATGAGTTGAGACTCAGGCTCCGTCCACAAGTATCTGGTTATTTTCCTTTGTTTGTCTAATATGATTGCAAATGTAAGTCTGGTCTTGAGTATCTTTTATAgatataatgaaatattaagATTATAACGATTGATACTGGACGCACAATGAGTTACacagtatattatttttactttctcattgttttctatttattaaatgttgtaaaatatcttaatctggtcttggtcttgactcggatttgattactaaaagtcttggtcttgacccGGATTTGACTACCagatcttggtcttgactcagatttGACTACAAAGTCTTGAGTCAGACaagactactaaaagtcttggtcttgactcagaacTGATTACTAAAAGTATTGGACTTGACTCGGATTTAAACAAGTCTTGAgtcagacttgactactaaaagtcttggtcttgagtCAGACTCGATTAGTAAAATCTTGGTCTTGAATCGGACTTgattactaaaagtcttggtcttgagtCAGACTCGATTAGGAAAATCTTGGTCTTGAATCGGACATGATTAGTAAAATCTTGGTCTTGAGCCGGAcatgactactaaaagtctagGTCTTGAGTCAGACTCGATTAGTAAAATCTTGGTCTTGAGTCGGACAGGATTACTAGAAGCCTTGGCCTTGAGTCGGACTTTATTAGTAAAATCTTGGTCTTGAATCGGACTTgattactaaaagtcttggtcttgagtCAGACTTGATTACTAAAAGTTTTGGTCTAGAGTCAGACTTCATTAgtaaagtcttggtcttgagtCAGACTTGATTAGAAAAATCTTGGTCTTGAGTCAGACTTGATTACTAAAAGTTTTGGTCTTGAGTCAGACTTCATTAGTAAAATCTTGGTCCTGAGTTGGACACAGCTACTAAAAGAGTTGGTCTTGACTCGCACCCGTCAACTaaaggtcttggtcttgacctgGACTTAACATGTCTTGGTCATAAACATATTTGTCCACAAAGAGAACCAAAAACATTAGCATGCTAGTCTTGTATGTTGAAATGTGAGATCTAGTGCAATCTGTGTGTAGACAACATAGTTCTCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85348 lncRNA downstream 974226 10658204 ~ 10658424 (-) True G63259
TU85344 lncRNA downstream 1002190 10630129 ~ 10630460 (-) True G63255
TU85337 lncRNA downstream 1042040 10590346 ~ 10590610 (-) True G63248
TU85336 lncRNA downstream 1067024 10564675 ~ 10565626 (-) True G63247
TU85293 lncRNA downstream 1316136 10314799 ~ 10316514 (-) True G63217
TU85441 lncRNA upstream 181581 11817096 ~ 11823077 (-) True G63320
TU85505 lncRNA upstream 347781 11983296 ~ 11983560 (-) True G63384
TU85709 lncRNA upstream 685040 12320555 ~ 12380556 (-) False G63516
TU85712 lncRNA upstream 700104 12335619 ~ 12336210 (-) True G63519
TU85721 lncRNA upstream 729953 12365468 ~ 12379880 (-) False slc2a13
XM_007232394.3 mRNA downstream 1199196 10424589 ~ 10433454 (-) False zbed4
XM_007232395.3 mRNA downstream 1199507 10424589 ~ 10433143 (-) True zbed4
XM_007232393.3 mRNA downstream 1226778 10394930 ~ 10405872 (-) True creld2
XM_007232390.3 mRNA downstream 1599979 9986304 ~ 10032671 (-) True LOC103042295
XM_015602384.2 mRNA downstream 1745162 9865360 ~ 9887488 (-) False LOC103036113
XM_022671332.1 mRNA upstream 88952 11724467 ~ 11779849 (-) False LOC103026034
XM_022671333.1 mRNA upstream 88952 11724467 ~ 11759456 (-) True LOC103026034
XM_022671334.1 mRNA upstream 145040 11780555 ~ 11805577 (-) True LOC111192951
XM_022671342.1 mRNA upstream 189331 11824846 ~ 11965807 (-) False LOC103026753
XM_022671341.1 mRNA upstream 189331 11824846 ~ 11965807 (-) False LOC103026753
TU85294 other downstream 1221419 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 2009862 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 3458848 8166678 ~ 8173802 (-) False LOC111192870
TU84254 other downstream 4894702 6735163 ~ 6737948 (-) True G62484
XR_002650150.1 other downstream 4909120 6722102 ~ 6723530 (-) True LOC111192868
TU85708 other upstream 685040 12320555 ~ 12365739 (-) True G63516
TU86395 other upstream 3149806 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 3358649 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 4949550 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 5246820 16882335 ~ 16887903 (-) False G64492

Expression Profile