RNA id: TU85380


Basic Information

Item Value
RNA id TU85380
length 521
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G63269
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 11718022 ~ 11718542 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgacctcgcacttcaaataattgaatatgaaaaacgctacaaatgattttcaataagaacaaattttatatgaatttatatctgtatgtttacagcaccaacatttatcaacaactattttctgcatattaatgcattttaatacggcaaaagacaaaccgtttgcttaaaaaaagtgcaaaaaggaagtccttcatatcaaagaacaaaaagtttgcttaaaaaactgattgcaaatacagtagttcctctgtgtaaaataagttcattataacaagtccttcataagcaacaaggacaaaacatttgcttagaaaagtgcaaaaggcatttgaactcatttataacaaagaacaaaaaagatttaaaaactgattgcaaatagctcattcaataatagcagaaaactagaccacagaggcccaacatttattgaagctaatgagagagctgtggtttggcctgctggctcacaatggactggatgtcaatgtcaattttcgtggttgtttggcagcgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85379 lncRNA upstream 16316 11701418 ~ 11701706 (+) True G63268
TU85357 lncRNA upstream 82476 11630642 ~ 11635546 (+) False G63260
TU85351 lncRNA upstream 82515 11630642 ~ 11635507 (+) False G63260
TU85397 lncRNA downstream 92614 11811156 ~ 11811590 (+) True G63285
TU85415 lncRNA downstream 238343 11956885 ~ 11975553 (+) True G63303
TU85449 lncRNA downstream 268456 11986998 ~ 11990396 (+) True G63328
TU85450 lncRNA downstream 288743 12007285 ~ 12007519 (+) True G63329
TU85543 lncRNA downstream 658604 12377146 ~ 12378927 (+) True G63410
XM_022671327.1 mRNA upstream 1253304 10440014 ~ 10464718 (+) True brd1
XM_022671343.1 mRNA downstream 261829 11980371 ~ 11986784 (+) True LOC103028484
XM_007234936.3 mRNA downstream 272058 11990600 ~ 11997857 (+) True alg10
XM_022671347.1 mRNA downstream 642642 12361184 ~ 12373369 (+) True c7h12orf40
XM_022671348.1 mRNA downstream 642642 12361184 ~ 12373369 (+) False c7h12orf40
XM_022671350.1 mRNA downstream 642642 12361184 ~ 12373369 (+) False c7h12orf40
TU85065 other upstream 2067935 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 2277458 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 3177899 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 3184790 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 4862260 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 749508 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 940906 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 1437684 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 3026193 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 4703692 16422234 ~ 16426613 (+) False arid2

Expression Profile