RNA id: TU85543


Basic Information

Item Value
RNA id TU85543
length 1761
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G63410
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12377146 ~ 12378927 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGACATCactaaaagaacattttaaagcacCTTCATGTTTAAAAGTGTATGATTTGAGTTTAAATATGTTGATTTTAGAAGATAACCGTTATTTCAAGAGTTCATACTTTCATTTGGCTACACTATTCAAAtataattacttaataattaCATGATTGATTACAAAGTTACTTCTGTAAGTAATAACATTTACAGTCTATATTGAGGTCAACTCGGCAATTCCTgcttttctccatttgtttcaaTGTCaagaaaatgacaaaacattaaGGCTCAAAACAAGACTAAAACTTTTCATTAAAAATCAAATCATTATAAAATATCTTCTCTCTGACTTACAAACCCAAGTGTGGTACTGACCAAGCTTTTATCTCTGACAATAAATGCAACTTGTAaggttaaccctcctgttaagTTTTCAGCAGTAATGAAACAACATTAATGTTTCTGGTTCAGATTGACATGGGGCACAGGTAGCCATCCAAATGTAAAGTATTTTTCTATACAGACACTTATAGTCTTAagtattaattcatttaatttctgtttagttcaataaaaaatgattaCATGGTGTACTTTAGGAATGCCCCAAATAACCGAATGTATTATTTGGTcaaatgtggaaaaagtgaaCAAGTATTCAGTTGTATAGataagtgaaaaaaaactaataattcaTATCAAACAATGATTAAATTGTTTAAGTCATAGGAATGTTAAAAATATCCAGTTtccaacaaaacaaaatacatttaggctgtttaatttattcaatGGTGAAAAAGGGGAAATTCAGGTAAAATTTATCCTTTGGCCACATGTTAccttttgggcccaaaaaatgtttaattaaatgcaTCCTTAGTTTACTTATTATGGTTCACtaatttttataaaaagaagttttgaaattaattcaaattatgtttattttttaatcctttGTATCCTCTGTATGATCTGAACAGTATTTGTGGGGTATAAAcgcatttttttgtgtattaaacTAATTAATTCCTGCAGAAAGGGGTTAATGATAtaaccaagtttttttttttttttttttttaactattgaAACAGGTCAGTTTGACCCACAGCATAACAGGAGGATTAACTTAACATTGTAGGGAAAATAGGGTTACCATCTTCTTCTACCTTCACCATTAACTGTAGGCAATTTTCTGTGTTATGGAAATGAAATAGCCACTAAAACAGTGACGTTTTTTAGTGACGTATATTATTGATCTGCATTGTACCACAACTCAAAAAATGTAGACCATGTGATGACCTCAGACAAAAGCTGACTTGGTGAGTGGGTGCGCTCGGTTGTGCTCTTCATCAGCAACTCCATTTTCTTCAATCATGGTGGACGGCTGTATGCGCAAGATGCAACCCGACTGGTTCAGACGGACCTGGTGTCAGGGTGGGGAGAAGCTAAGGACCGATTCGTTCTCTCCCTCTGCTCTTCATCAGCCCTGAACCGAGCCCGAGAGAGGATTCACAGTTGTGTTCTTAGAGCTGGCGTTACAGTGTTACTCGACATCTGAGGCGTCGTTGTCCGACAGGTGGTAATTTGATCCTTTGACCCTGATATACTCCACTTGCCGGCCCTCGTCTGAATCTGAGGCACCGCAGGAGCACAGCCGACTCTCGAAGAGCGACTCGATCTCCTCCAGCCGTCGGCCCTTGGTCTCGGGCAGGCAGCCGTAAATAAAGAAGAAGCCCAGCAGAGACAGACTGGAGTACAGAAAGAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85450 lncRNA upstream 369627 12007285 ~ 12007519 (+) True G63329
TU85449 lncRNA upstream 386750 11986998 ~ 11990396 (+) True G63328
TU85415 lncRNA upstream 401593 11956885 ~ 11975553 (+) True G63303
TU85397 lncRNA upstream 565556 11811156 ~ 11811590 (+) True G63285
TU85380 lncRNA upstream 658604 11718022 ~ 11718542 (+) True G63269
XR_002650191.1 lncRNA downstream 310392 12689319 ~ 12696748 (+) True LOC111192954
TU85623 lncRNA downstream 320121 12699048 ~ 12746828 (+) True G63460
TU85629 lncRNA downstream 428940 12807867 ~ 12811899 (+) True G63465
TU85656 lncRNA downstream 779398 13158325 ~ 13162362 (+) False G63488
TU85657 lncRNA downstream 779398 13158325 ~ 13163098 (+) True G63488
XM_022671347.1 mRNA upstream 3777 12361184 ~ 12373369 (+) True c7h12orf40
XM_022671348.1 mRNA upstream 3777 12361184 ~ 12373369 (+) False c7h12orf40
XM_022671350.1 mRNA upstream 3777 12361184 ~ 12373369 (+) False c7h12orf40
XM_022671349.1 mRNA upstream 3777 12362473 ~ 12373369 (+) False c7h12orf40
XM_007234936.3 mRNA upstream 379289 11990600 ~ 11997857 (+) True alg10
XM_022671172.1 mRNA downstream 131961 12510888 ~ 12556587 (+) True LOC103032294
XM_022671351.1 mRNA downstream 179733 12558660 ~ 12595497 (+) True LOC103032798
XM_022671352.1 mRNA downstream 225183 12604110 ~ 12626928 (+) True LOC103033113
XM_022671353.1 mRNA downstream 225183 12604110 ~ 12626928 (+) False LOC103033113
XM_022671354.1 mRNA downstream 254352 12633279 ~ 12650099 (+) True LOC103023853
TU85065 other upstream 2727059 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 2936582 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 3837023 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 3843914 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 5521384 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 89123 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 280521 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 777299 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 2365808 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 4043307 16422234 ~ 16426613 (+) False arid2

Expression Profile