RNA id: TU85629


Basic Information

Item Value
RNA id TU85629
length 4013
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G63465
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12807867 ~ 12811899 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGAACAGAACGGGTCAAAGCAAACGGGGAAAATGTGACCGAATAGATCCGAATCCGATGTCCGAGCCCCTCGAGTACACCCTGTCAGCCTGATTTAGAGTCAGTGCGGTTTGAACTCAGGTACCAGTGCACTAGCCCTTTCAATAGCACTTAAATCCAGAGTTAGCTTTGTAGCCTTTGGCTGCATGTGTGAAGCCTCCACCCCGTTAGCACAAATACTCTGATTCTGTCTGAAGTTTCAGGCACTACACGCACTTCACAAAAGCACTGAAAGTGCTACACAGTTCACCGCGATGTCTCCCTGACCCACGCGCTGCCCCCCTGAGGGAGTGTGAGGAGGACTATCTGTGATAGAGGAGGGCAAATATGAACTGCATTCACTCAATATTTCATTCGTATGTTATTGACGGAATCGATTCACCCTGAAGGAATTTGAACCCCATTTGATGCCGACTTTGTGGTTTTGGAGCTTCCATGTctgaaatctgtaaaaaaaaatacttctttaAAACAAGGTGTAGGAGCTGAATTACAGAAACATGTAATGCCTGGCTCACACTACAGGATAATCATGCAGGAAATCCATCTTAAGGCCGATATGATCTTCCTGCCAATCGTGAATAATATTCTCACGATTTTAaggtgatttaaaaaacaatgatcTTCTCATACAATCCTTTAGAGTAGGTGGTgtctaaattaaatttttttagtgCTTAGATCTTCTCCAAAAGCCGTTGCTCTGCCCCGATCGTATCCTATATCCTGCAGTGATTCTTTGGTGGAAAAGTAACTTTGACCCCCTCATGGATACTGTCAACCAATGAGAGCTGAGCTGACCAACAAGGTGTATATATTCACCTTCGACTCACATTGAAGTACATATCACCTataaattctttcttttttcttgttttttttggagcaaaaattgttaaaaactaGCAGCAAAATCCATTGACGTGAAACCTCCAGTTTGTAAGAAACTCCCACAAGGTTTTAAGGGTCGTACACTTGCTCTTTTATAATACCGAAAAATCTGTGAAAAATGTCTTTATGCGTGGGGTCTCTCATTTTCTCAACATGAGGAAAGATTTAAAgaacattcacattaccaggctaaaactacttcagatcagatcagattttttttgcattaatgtgACTTCTCTATCAGGACTGGTGGAGatgccaaatcagatttaagttcCTTTGAGTGAGATGTGGACCTAGACTGGATATGCATTGGATTTGTGGCCAtgcaacataataataataatttaaaatggtaaagCATTTGTTTTAATAGCAACCACATTTACAACACTGCGTGCTCAAAGctcaaatgattaaaatagaCAGTTCTTGTTCACAAAAAAAGTTCATGTCTAACTTATGTTGCAGCGAGCGCTGCACattcattttacagtaaatgtgcaaacagcttagcatggagcagcagcagcatagaGAGCgtttttttaagagctgtattCATTAtgtgggtaataaatcaggttaaactgcaactGAACAGCTCTTTCTCTCAAAGAAAATCAAACGTTCTAAATTTGGTTTGGGACTGAATGGAGACGTCTTGTGGGTCGCAGTGCGTTTGTTTTGGTCCTCACTTGAGagcaattactgttttcacgTCAGCCAAAATGAACTTTACCGAGGGTTCAAATGaaccagagtttgttttaaccaaagtaaacagtgtaaaaacaccctaaaataaGATGCTGTGGATATACTTGAAAATTTGTTACTGTTTGTTTCTGTAATACAGCCCCATATCTCCAAGGTCTCCAAAATTTCCAATTAAATTCAGACTTGGCAGATGGAGGAAGCATGGTGTTCTCCTTAGTAAAGGACAGAGGTCAAGTTGGGTGGctcattttgtttggtttgtggGTGCAGGCTGGTGCAGCAATGAGGAGAGTAGATGGGAATAGATGGGGATAGTCAATTTGCTGCTGTCCAATCGACACAAGTCTGTATCTTCTAAATCAACCCTGACTGCTCACCAGCTCTAACGAGATTGGCTCTCTCCTCCTCTGCTTCTCCCATCCTCTGTTCTGTTACCCTATatggaaatgaaatgaaatgaagggGAATGAAATGAGGGAGACAGGATCAGATAGTAGAGCTCCAAACAGCAGCAATGTAATTATGAACAAAGCTCTCTGTGCTGATAACAGAGCAGAGGAGTTCTGAGGAACACCTATTCAACACATGCCAACGGTGCTCATGATTAAAACATGGAGGCTTCCAGACCAGGCAGACGATGACCTACCTCCGATAAGGACGGCTCGTGGACTGGTAACATTTACTGGACCTGAAACGACATTGACATCGACGTGGACTCCTCCCCCATTCAGGCTCTGGATATGATATTTACACACTtggaaacaaacagaaaacaaacacaaacaaagccGTTGTTCAACCTTTCCATCCTCCGGCTCCAATCAGAGCGAAGCAGACGAACATTCAGGTTTAAAGTGTTTCTGTGCTGACGACGACGGCGACGGCGATGAAGACGCGCATCAGGTGATGTTTCAAGTGTCACTTAAAGTTTGAAAAGGCCAAACAAAAGGTCATCAGGAAGGAGAAGTTACAGGAAAGAGAACCGATTGTGAAACTGACCAGAACTGTACTACTGTATGTCCAGGTCTGTTAGGGGTGACTGATTAGTTCAATAAAGCCAGTGAGTACTGAACATGATGATACACTGACAAGAGAGTTAACGATAGAGGGAGCGAGGGTCAGTATATATCCGTCAGGGAACATCGTAAAGATGACACCGACAGACATTTTGGGATATTAGTGTCCAAAAAAAGGGAAGCTAGATAAAAACTCCTTGTCGTGAGTGCCTCCTGCTTTCTGAAGATGCTACATAtagtttttagttgtttttttttttttttaacgaagTTTGCGACAAAATTTCTTGACGGAGTTCTCGACGAACCTGACGAAGACCTGACGAAGATTTGACACCGCCACTGTTGCCTTCACATATACGTTCCAGGATTCCTGAGCAAGAGAACAACAGCCACTGCGAAGGGTTCCCGAAGACTGGCTGCGATTGGTGGCTCTCGGTTTGGCAGTGAGCCGTGATTGGTCATCGTGTGTCGTCCTCAAACTTTACTgtactatatactgtactgtatgtacctGCTTTTAAATATGAATACCAGGAGAAGAAACCAATGCATGTCTAGTTGTTTAGTAGGTTTGGATTCCGAAAAAGTACAGAGTTGATCATATATATATGGAGGCAAAAGGTTTCAACAAAAGTTTTACAAAGCAATATTGCCggtttcatatttttgttcagaTTTCTCAAATTTGCGATTCAATTGTTTCGCTCTTTATCATCACAGTCCTTGAGGGAAGCCAAAAAAGGTACAGTATCATAAGCACATAAGCAAAAGTCCAATCTAGCCCTAAGCTTTCTTAGAGTGCAACGGTTTCATCGTGGGGTGTAAAGGGGGAAGGGTTGTTCTCATTTTGGCACGTACAGTACATCATCCGCCAGTCCAATGCTCGCACATACGTACGTACACACAGGTACAAACAGGTATTACAGTAAGGTAATAAAAGACTGAGATATCAGTCAATCAGAAGTCAGAAGTGGCTCGTGGACAGGCTGCCGCCGGACTCAGGTCATGTTGTTGGGTCGTAAAGTTCATTTTCTAGCCTAGCTCTAAAAATACCAGAGAAATTCTGAGCGGGACAACCTGTCGGAGCTCTGTTTCAAAAAGAATTCGTTAAATTTGTTAAAACtacgtatgttttttttttgttcattttcttgTTCAAAATACACAGGAGTAAATCAAGTAGATCTTTTCATTTCTTCTGTTCTTATTTCGCATATTTCTGAAAAGgtacatattaataataataaagtacatatttttcttttttcactttcaatcctatttttttgtttcatttaattcATGTAGCTTAAATATATATGCCTAtagatatgtattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85623 lncRNA upstream 61039 12699048 ~ 12746828 (+) True G63460
XR_002650191.1 lncRNA upstream 111119 12689319 ~ 12696748 (+) True LOC111192954
TU85543 lncRNA upstream 428940 12377146 ~ 12378927 (+) True G63410
TU85450 lncRNA upstream 800348 12007285 ~ 12007519 (+) True G63329
TU85449 lncRNA upstream 817471 11986998 ~ 11990396 (+) True G63328
TU85656 lncRNA downstream 346426 13158325 ~ 13162362 (+) False G63488
TU85657 lncRNA downstream 346426 13158325 ~ 13163098 (+) True G63488
TU85662 lncRNA downstream 358903 13170802 ~ 13193768 (+) True G63490
XR_002650154.1 lncRNA downstream 359797 13171696 ~ 13172427 (+) True LOC111192873
TU85665 lncRNA downstream 361494 13173393 ~ 13198835 (+) True G63493
XM_022671362.1 mRNA upstream 4296 12767838 ~ 12803571 (+) True LOC103034184
XM_022671360.1 mRNA upstream 64256 12701140 ~ 12743611 (+) False LOC103025111
XM_022671358.1 mRNA upstream 64256 12702097 ~ 12743611 (+) True LOC103025111
XM_022671359.1 mRNA upstream 64256 12702098 ~ 12743611 (+) False LOC103025111
XM_022671355.1 mRNA upstream 126840 12667180 ~ 12681027 (+) True pyroxd1
XM_022671363.1 mRNA downstream 344346 13156245 ~ 13161367 (+) True LOC111192955
XM_022671364.1 mRNA downstream 398323 13210222 ~ 13242742 (+) True LOC103034836
XM_007234959.3 mRNA downstream 459278 13271177 ~ 13303112 (+) True st8sia1
XM_007234962.3 mRNA downstream 557781 13369680 ~ 13381915 (+) True LOC103036201
XM_022671368.1 mRNA downstream 574639 13386538 ~ 13395569 (+) False LOC103026035
trnag-gcc_1 other upstream 148349 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 338965 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 3157780 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 3367303 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 4267744 8533348 ~ 8540123 (+) True LOC103041471
TU85654 other downstream 344327 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 1932836 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 3610335 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 3627321 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 3941144 16753043 ~ 16753560 (+) True G64431

Expression Profile