RNA id: TU85657


Basic Information

Item Value
RNA id TU85657
length 1342
lncRNA type sense_over
GC content 0.31
exon number 2
gene id G63488
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13158325 ~ 13163098 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCACCACTCAAAGCGAGAATGTGGAAATAACTAACAGACCACAGACACTCAAGGACTACTTTATGAACTTTTATGAACTTTTTTACTTCATGCTCAAAGAAGTGGACTTGATTATCCATGAATCAGTAATGGATTATGGAATGATTTTCTGTTGGTTTGTGAAGGCCAATAGTGTTGATTTGCTTTTAAAGTAAAAGCACcaaatattgttgttgtttttatatgtttctgttttttttttcatgttctttttaatgtttatttaaccctagaacacccagaagtacccatctaaaaatctacttgagaaaaagtaaaaaagtactcaatttaaaatgtactttgagtaaaagttacatagttacttttatttattttatgtgaaaaagtacaaatcataatttaaataattattcaatTAAACAATGTGTACGTTGTAGGCtatatttgttcagaccaccccataaaacattttcaagaacaagtggcataggtttctatcatccctttgttttttactgttaaaataattaaaatgtttggtCATATTGGTGactgtaaactgtatttttatagatttacagttcattattattttttaacttgccattgctatgctttaactgctatttacatgtttttttttacatttaagcagattgtttaatgttcctaaTTAAAACTTAAgggaatattattaaaaacatgaaatcatacaaaaaaaactgttggttggcgcatgcgcagtgccgcaaagaagcacatattgataggtagcataactcgacagaacggcggttcccccgagcacagctgattcacacagcgtctctcccgctaaccgtaataaacactgcatggaaaagttcagctgcgctgccatggagaacaaaactaaatttttttttttttcagattttttttttttccagcatttattttttttactccgtaatggggagttttccaatgtagtgaagtaaataacttgtgtcaaaatgaacttgaggaaaagtaaaattacctattttaaaaactactttaaaaatgacaaattactcataaaatctactcaattacagtaatgtgagtaaatgtaattagttactttccacctttgGTAACAGGTaatatcctaaaaaaaaaaagaatgctgcTGGCAACTTGGTCTTTAGTCCACCCATTCCTgggcctgatttaaacacacaaacactaacatcaggtaaattacacccataaaatatgttaatcTCTATCACTAACATCGGATGAAAATCACACGAATGCAtgcctcttaaaaaaaaaatagataagagaagggaatcaaccataacattaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85629 lncRNA upstream 346426 12807867 ~ 12811899 (+) True G63465
TU85623 lncRNA upstream 411497 12699048 ~ 12746828 (+) True G63460
XR_002650191.1 lncRNA upstream 461577 12689319 ~ 12696748 (+) True LOC111192954
TU85543 lncRNA upstream 779398 12377146 ~ 12378927 (+) True G63410
TU85450 lncRNA upstream 1150806 12007285 ~ 12007519 (+) True G63329
TU85662 lncRNA downstream 7704 13170802 ~ 13193768 (+) True G63490
XR_002650154.1 lncRNA downstream 8598 13171696 ~ 13172427 (+) True LOC111192873
TU85665 lncRNA downstream 10295 13173393 ~ 13198835 (+) True G63493
TU85692 lncRNA downstream 94803 13257901 ~ 13311171 (+) False G63510
TU85694 lncRNA downstream 94803 13257901 ~ 13311171 (+) False G63510
XM_022671362.1 mRNA upstream 354754 12767838 ~ 12803571 (+) True LOC103034184
XM_022671360.1 mRNA upstream 414714 12701140 ~ 12743611 (+) False LOC103025111
XM_022671358.1 mRNA upstream 414714 12702097 ~ 12743611 (+) True LOC103025111
XM_022671359.1 mRNA upstream 414714 12702098 ~ 12743611 (+) False LOC103025111
XM_022671355.1 mRNA upstream 477298 12667180 ~ 12681027 (+) True pyroxd1
XM_022671364.1 mRNA downstream 47124 13210222 ~ 13242742 (+) True LOC103034836
XM_007234959.3 mRNA downstream 108079 13271177 ~ 13303112 (+) True st8sia1
XM_007234962.3 mRNA downstream 206582 13369680 ~ 13381915 (+) True LOC103036201
XM_022671368.1 mRNA downstream 223440 13386538 ~ 13395569 (+) False LOC103026035
XM_022671367.1 mRNA downstream 223442 13386540 ~ 13396263 (+) True LOC103026035
trnag-gcc_1 other upstream 498807 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 689423 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 3508238 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 3717761 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 4618202 8533348 ~ 8540123 (+) True LOC103041471
TU86374 other downstream 1581637 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 3259136 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 3276122 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 3589945 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 3670198 16833296 ~ 16864454 (+) False LOC103030423

Expression Profile