RNA id: TU85662


Basic Information

Item Value
RNA id TU85662
length 507
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G63490
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13170802 ~ 13193768 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCAGAGCCGGTTTAATCAAATTCTGCATATTGGCTATTTCAAATTTGAGTGGAGCGGCTGTCGGGCTGCTGTCCGGAGGGGAGCAGGCAGCATACCAAGCTATTTAATTGAGAGTAGAAGTTGTGCCTACTCCAGAGTTTTAAATGAGAATAGAAGCTGTTCCTATTCCAGGGTGTTAAACGGTAGACGCTGTACCTACTGGTTTTAAGGATTGGAAGCTGGCGTGTCCCCCCGGCTTCTGACGAGAAGTTCGGATAAAGGCCAGGTGTAAGGCTCACCTCGAGATTGATCCGCTCGTAAACAAGCCAGAGTAGACGCTGTACCTACTCACCTCTATTTTAATTCGGTTAAAAAAGAGCAGATGCTGTACCTGCTCGGGTAGACGAAGtacactacttctctattttaattcggttaaaaagagcagatgTTGTCCCTGCTCGGGTAGACGTTGTACctacttctctatttttattcggctgaacaaaaaaaaataaaataaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85657 lncRNA upstream 7704 13158325 ~ 13163098 (+) True G63488
TU85656 lncRNA upstream 8440 13158325 ~ 13162362 (+) False G63488
TU85629 lncRNA upstream 358903 12807867 ~ 12811899 (+) True G63465
TU85623 lncRNA upstream 423974 12699048 ~ 12746828 (+) True G63460
XR_002650191.1 lncRNA upstream 474054 12689319 ~ 12696748 (+) True LOC111192954
TU85692 lncRNA downstream 64133 13257901 ~ 13311171 (+) False G63510
TU85694 lncRNA downstream 64133 13257901 ~ 13311171 (+) False G63510
TU85699 lncRNA downstream 64133 13257901 ~ 13311171 (+) False G63510
TU85697 lncRNA downstream 112993 13306761 ~ 13311171 (+) False G63510
TU85700 lncRNA downstream 112993 13306761 ~ 13311171 (+) True G63510
XM_022671363.1 mRNA upstream 9435 13156245 ~ 13161367 (+) True LOC111192955
XM_022671362.1 mRNA upstream 367231 12767838 ~ 12803571 (+) True LOC103034184
XM_022671360.1 mRNA upstream 427191 12701140 ~ 12743611 (+) False LOC103025111
XM_022671358.1 mRNA upstream 427191 12702097 ~ 12743611 (+) True LOC103025111
XM_022671359.1 mRNA upstream 427191 12702098 ~ 12743611 (+) False LOC103025111
XM_022671364.1 mRNA downstream 16454 13210222 ~ 13242742 (+) True LOC103034836
XM_007234959.3 mRNA downstream 77409 13271177 ~ 13303112 (+) True st8sia1
XM_007234962.3 mRNA downstream 175912 13369680 ~ 13381915 (+) True LOC103036201
XM_022671368.1 mRNA downstream 192770 13386538 ~ 13395569 (+) False LOC103026035
XM_022671367.1 mRNA downstream 192772 13386540 ~ 13396263 (+) True LOC103026035
TU85654 other upstream 9482 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 511284 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 701900 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 3520715 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 3730238 9433437 ~ 9440564 (+) False LOC111192948
TU86374 other downstream 1550967 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 3228466 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 3245452 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 3559275 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 3639528 16833296 ~ 16864454 (+) False LOC103030423

Expression Profile