RNA id: TU85738


Basic Information

Item Value
RNA id TU85738
length 1334
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G63540
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12534965 ~ 12538377 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTGGAGGAACAGTGAACGCTGTTGTAGAAATTGTTGCTGTTGTGAAAGGTGTGCTGACTTGAGTTGTCTGTAACCATTCTTGAGGTGAAGTGTGATTGTGAGGTAAGAGAGGTGGCCCAGTGTATATAGGTGGCATTGTTGTGGCTTTGGTTGTATATACTGGTTCAAGTGTAGTGGTAGTTAATAGAGTTGTGAGTTCAGTTTCTTTAGTTGTGCTTGAGATTTCTGTGGCTGTTGTTGGCTCTGGTATTATTGGAGTGAATGGAGTTTCAGTGGTTGGTGACACTGTTGTCTCTGTTACTGTTGAAGTTTCAAATTCTCCTGTAGAAAACTCAGTGGTTGGTGACACTGTTGTCTCTGTTACTCTTGTAGTTTCAGCTTCTCCAGTAGAAAACTCAGTGGTTGGTAACACTGTTGTCTCTGTTAATCTTGTAGTTTCAAATTCTCCTGTAGAAAACTCAGTGGTTGGTAACACTGTTGTCTCTGTTACTTTTGTAGTTTCAAATTCTCCTGTAGAAAACTCAGTGGTTGGTGAGACTGTTGTCTCTGTTGCTCTTGTAGTTTCAAATTCTCCTGTAGAAAACTCAGTGGTTGGTGACACTGTTGTCTCTGTTACTCTTGTAGTTTCAAATTCTCCTGTAGAAAACTCAGTGGTTGGTGAGACTGTTGTCTCTGTTACTCTTGTAGTTTCAAATTCTCCTGTAGAAAACTCAGTGGTTGGTGACACTGTTGTCTCTGTTACTCTTGTAGTTTCAAATTCTCCTGTAGAAAACTCAGTGGTTGGTGAGACTGTTGTCTCTGTTACTCTTGTAGTTTCATATTCTCCTGTAGAAAACTCAGTGGTTGGTGACACTGTTGTCTCTGTTACTCTTGTAGTTTCAAATTCTGCTGTAGAAAACTCGGTGGTTGGTGAGACTGTTGTCTCTGTTACTTTTGTAGTTTCAAATTCTCCTGTAGAAAACTCAGTGGTTGGTGACACTGTTGTCTCTGTTACTGTTGAAGGTTCTGATTCTTTTGTAGAAAACTCAGTGGTTGGTAACACTGTTGTCTCTGTTACTCTTGTAGTTTCAGATTTTTCTGTGGAAAATTCAGTGGTTGGTGACACTGTTGTCTCTGTTACTGTTGTAGTTGTAGATTTTCCTGTAGAAAACTTAGTGGTTGGTGACACTGTTGTCTCTGTTACTGTTGTAGTTGTAGATTTTCCTGTAGAAAACTTAGTGGTTGGTGACACTGTTGTGTTTGTTACTGTAGTAGTCAGCAGACTTGTAGGTTTTGGTACTTCTGTTGTAGTTAAATAGGTTGTTGACCGTGCCGTGGTAGATGCACAGTATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85733 lncRNA downstream 5324 12527889 ~ 12529641 (-) True G63538
TU85720 lncRNA downstream 122383 12373189 ~ 12412582 (-) False slc2a13
TU85709 lncRNA downstream 154409 12320555 ~ 12380556 (-) False G63516
TU85721 lncRNA downstream 155085 12365468 ~ 12379880 (-) False slc2a13
TU85712 lncRNA downstream 198755 12335619 ~ 12336210 (-) True G63519
TU85755 lncRNA upstream 44400 12582777 ~ 12587477 (-) True G63552
TU85825 lncRNA upstream 262088 12800465 ~ 12803555 (-) True G63607
TU85814 lncRNA upstream 267594 12805971 ~ 12816418 (-) True LOC103025415
TU85840 lncRNA upstream 313897 12852274 ~ 12854361 (-) True G63617
TU85895 lncRNA upstream 619995 13158372 ~ 13162362 (-) True G63662
XM_007234950.3 mRNA downstream 34302 12373176 ~ 12500663 (-) True slc2a13
XM_007234940.3 mRNA downstream 175224 12330033 ~ 12359741 (-) True LOC103029428
XM_007234949.2 mRNA downstream 214640 12255305 ~ 12320325 (-) True LOC103029962
XM_022671344.1 mRNA downstream 288406 12029314 ~ 12246559 (-) False LOC103023221
XM_007234956.3 mRNA upstream 145849 12684226 ~ 12689035 (-) True LOC103033667
XM_022671361.1 mRNA upstream 153213 12691590 ~ 12699482 (-) True LOC103024791
XM_022671173.1 mRNA upstream 269438 12807815 ~ 13027498 (-) False LOC103025415
XM_022671365.1 mRNA upstream 711275 13249652 ~ 13260256 (-) True LOC103034510
XM_007234961.3 mRNA upstream 858108 13396485 ~ 13422065 (-) False scyl2
TU85708 other downstream 169226 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 2123734 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 2912177 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 4361163 8166678 ~ 8173802 (-) False LOC111192870
TU84254 other downstream 5797017 6735163 ~ 6737948 (-) True G62484
TU86395 other upstream 2246944 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 2455787 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 4046688 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 4343958 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 4343958 16882335 ~ 16887903 (-) True G64492

Expression Profile