RNA id: TU85755


Basic Information

Item Value
RNA id TU85755
length 1460
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G63552
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12582777 ~ 12587477 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggagctactttgagcctgggtAATGGTGGAATctattggggcaaaatatgccccgatattgccgttgtacagagtgctggtttcggattttggctcttgctcatgaatattcatacatgcaaacatatcacctctgattggctaacagcactaccACAGCAGGAAGCAGAcgacagttagaaacgttttaaaataaagccatttttacactaataacagtctttgcgaTGTCATATGTTACCTTACAACATGTGTTataccctgctaagtgcagttcagccactgacccagTCTTAGAGCCTCTGTAAACTgcaaaatccactggagatcctatctAAATTCAAAAGTTAGTCACAAAGGTGGGTAgttcaggtccagaaagtaaaaatccaccctgatgttttgttggctgagctgcagcagggtcaatttttacttttaactagtgtaaacagaactgaacCTCAGTATCTCAATTGTAGACATAGACAAATTTAAAcaatttgttccttagctcttaCCTACTGGGAAAAGCATATAACACTAATGTGTTATTTGGACAAATAACTcaggaacgaactgccatgctgttcctagcactgttagctcATAACCTGGCTcaacttgtttttctgaatatttactttttcttagctgctgcagacaatgatgtttgaggaacagtttcatatacagcatgcatatacaactcagagggacctagtatttcacaaagaacaagaaaaagtggattttagacCTTTAAAAAACTTGCTGTGACCAAAATGCTATCCCCAATTTAGCTGAGCTAATTAACCCAACAACTTACTATATaaaggactccccctatcaagTGTTAGAGGTCAAGCAGAACACCAATGATTCACCAATGCTTCTTTCAGCCGCCAAACTAAAGGTGTGGGAAAACAAACATACGTAAACCCTTACGTAAACACTTACGTATATCTAATCTCATCTACTGCCTTTACTTTACAACCTCACCTTTAATCCTCAGGTAAACCTGTAAAACTGTGTTCACGTGTTTCTGTGGGTCTGAACCTGCACTACTGTTCCAGCTCTGAACAGACAGCAGGAGAAAAGTAAACACCCACCTATCAGGAAGATGGCCTTCGATGCGGACTGGCCATAGGTCTGCTCCATGTACTTCGGCTTGAACGTGATCATCCCGATGAAGCCGTTAACTTGAACCAGGGCAGACATGGTGACGGGCTCTTGTTTGTCGGGTGCTGGGCTGCTGGTGCTGTCCGTGGTGATGAACGTATCCTGCTCGCCCTCTTGATCATCAcagctcttcttctcttcttctccttgTTTGGGCAGTGATCTGGGCAGGAACCAAAATGGGATCCCAGCCACCAGCATCACAGTTCCGGTCACCAAGAAGCCGAGCCACCAGGCCCCCACCCAGCGAGTGTCTTTATGATCAATGGCGATGGTGT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85738 lncRNA downstream 44400 12534965 ~ 12538377 (-) False G63540
TU85742 lncRNA downstream 44400 12534965 ~ 12538377 (-) True G63540
TU85733 lncRNA downstream 53136 12527889 ~ 12529641 (-) True G63538
TU85720 lncRNA downstream 170195 12373189 ~ 12412582 (-) False slc2a13
TU85709 lncRNA downstream 202221 12320555 ~ 12380556 (-) False G63516
TU85825 lncRNA upstream 212988 12800465 ~ 12803555 (-) True G63607
TU85814 lncRNA upstream 218494 12805971 ~ 12816418 (-) True LOC103025415
TU85840 lncRNA upstream 264797 12852274 ~ 12854361 (-) True G63617
TU85895 lncRNA upstream 570895 13158372 ~ 13162362 (-) True G63662
TU85898 lncRNA upstream 572042 13159519 ~ 13166674 (-) True G63664
XM_007234950.3 mRNA downstream 82114 12373176 ~ 12500663 (-) True slc2a13
XM_007234940.3 mRNA downstream 223036 12330033 ~ 12359741 (-) True LOC103029428
XM_007234949.2 mRNA downstream 262452 12255305 ~ 12320325 (-) True LOC103029962
XM_022671344.1 mRNA downstream 336218 12029314 ~ 12246559 (-) False LOC103023221
XM_007234956.3 mRNA upstream 96749 12684226 ~ 12689035 (-) True LOC103033667
XM_022671361.1 mRNA upstream 104113 12691590 ~ 12699482 (-) True LOC103024791
XM_022671173.1 mRNA upstream 220338 12807815 ~ 13027498 (-) False LOC103025415
XM_022671365.1 mRNA upstream 662175 13249652 ~ 13260256 (-) True LOC103034510
XM_007234961.3 mRNA upstream 809008 13396485 ~ 13422065 (-) False scyl2
TU85708 other downstream 217038 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 2171546 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 2959989 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 4408975 8166678 ~ 8173802 (-) False LOC111192870
TU84254 other downstream 5844829 6735163 ~ 6737948 (-) True G62484
TU86395 other upstream 2197844 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 2406687 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 3997588 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 4294858 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 4294858 16882335 ~ 16887903 (-) True G64492

Expression Profile