RNA id: XM_022671173.1


Basic Information

Item Value
RNA id XM_022671173.1
length 8045
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC103025415
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12805971 ~ 13027498 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCTCCTTTTCCCTGACAGGAACCAGACAGTGCTGCACCAGTTCTGCTGCCCCGCTCCGGACGCTCCCGAGGCCGAGTCTCAGGCCTGCGTACCCAGCAGTGAAGAGACTCCCCCTGCCTCTCCCGTCACTTCGCCGTCCCCCTGTGGAGCCCCTGAGGGCCCCGAGAGGCCTCCGGATGGAGGGAGCCCGGCCACACCTGTCgacggaggaggaggaggaggagggggggacGGAGGAGGAGCCGAGGGGTCGGAAGCGACGGAGGCGGAAACGAGGgtgggagagagtgagatagaagaCAGAACTCCAGACCAAGCCCAGCAGGCCCAGCCACAGGTCCAGGTCCAGCACCAACcccatcaacaacaacaacagcagcagcagcaggaggaggaggaagaggaggaggtggaggaggaggtggagacgGAGGAGGACGTGAAGAAAGAAGCCGAGGACGAAGAGGCCGGAGGAGGGCGAGGAGGGACAGGGGGCGGCAGGAGGCCCAGCCTGCACCACACAGCCTCCCCAATCAGGGTGCAGAGGAACGGGGCCTGCAGCCACTCCACAGCGTCCGACTACGAACTCTCGCTCGACCTCAAAAACAAGCAGATCGAAATGTTAGAGCACAAATATGGAGGCCACCTCATCTCACGCCGTGCCGCCTGCAAGATTCAGACAGCCTTCCGCCAGTACCAGCTCAGCAAGAACTTTGAGAAGATTCGCAACTCCCTCCTGGAGAGCCGCCTGCCTCATCGCATATCCCTGCGCAAGGTGCGTGTGCAAAATGCTGAGGGGTTTTCCGCTGAGCGGGCGCTGGCTGAAGGCTGCTCCATGGCGGGCATCCCCCTGGTCCGTTCCCCTTCCCTTCCTACGACTGTCGGAGGCACCCTCACCGACCTAGAGGACTCTTTCACTGAGCAGGTGCAATCCCTGGCCAAATCGATTGATGATGCTCTCAGCAATTGGAGCTTGAAGACCATGTGTTCCTTGCAAGAGGGAGGCACCTACCAGTTCAGCTCTGAGGCCTTCAGTGCTGCAGGTGCCAAGCCTGCAATGGCAGGAACTATAGTGGAGGGTGGTCCAATAGATCCGAATGTCCTCCAGAGTGGTATGGGCCAGGGGGACAACTCTGAGAATGTGGCCCGGAGTGCCAGCAAGTTGATGATGGCCTTCCGGGACGTGACAGTCCAGATCGATAGCCAGAACTTCCGTATGTCCTCCTCTGTCATGGAGTCCTCCACTTCTGTATCCCTTGGAAACTGCATCCAGCAAGGGGCTGCAGTAACTGAGTGTGCAAAACTGTCCCCGGTGGAAGAAGCAACACCACAAGAACAGTTTGCTCAGCCTCCCCAAGAGCCAGCTCCCCCGCCTCCAGAGCTAGACCTTGGGGAAGTACCAGACGGAGATTTTCCGGCACCACCACCAAGCGAAGAGGAATTTCAGGAAGAATTACCACCTCTAGCCCTGGAGAAGACCGAGATCCCCGGGCCCGAGGTGCCACCTCCAGCAGAGGCAGTATTAGAGGCTGTTCCGCCACCAGAGGTTCTGGGGACTCCAGTAGCCCCTAATGTAGAGGTTCTAGAGGCCAAGCGCAGCGAGTCGGACCCGGCGGATAATAGCTCAGAGCagatgagcagcagcagcacatccacATCTGCCAGATCTGCCTCTGAAGCCTCGTCCAAAGAAGCCTTGCAGACCATGATGCTCAGTCTACCCCGTTACCACTGTGAGAACCCTGCAAGCTGCAAATCCCCTACCCTCTCCACAGACGTCATGCGCAAACGCCTCTATCGCATCGGCCTCAACCTCTTCAATGTAAATCCTGATAAGGgtctgcagttcctcatctccCGCGGCTTTATTCCGGACACGCCCATTGGTGTGGCTCACTTCCTGCTGCAGAGGAAGGGGCTGAGCCGGCAGATGATCGGAGAATTTCTCGGGAACAGCAAGAAACCGTTCAATAGAGAAGTGTTAGAttgCGTGGTGGATGAGATGGACTTTTCCGGGATGGAGTTGGATGAGGCTTTGAGAAAGTTCCAGGCTCATATCCGTGTGCAGGGCGAAGCGCAGAAAGTGGAGCGGCTCATTGAGGCATTCAGTCAGCGCTACTGCATGTGCAACCCAGATGTGGTGCAGCAGTTCCACAACCCGGACACCATCTTCATCCTGGCCTTCGCCATCATCCTCCTCAACACTGACATGTACAGCCCCAACATCAAGCCTGACCGCAAGATGATGCTGGAGGACTTCATTCGTAACCTGAGGGGAGTAGATGATGGAGCAGACATCCCCCGGGACATGGTGGTGGGCATTTATGAACGAATTCAGCTGAGAGAGCTCCGCTCCAATGAAGACCACGTCACCTACGTCACCAAAGTGGAGCAGAGCATTGTGGGAATGAAAACAATTGTCTCCAGTTCCATCAGGTTGGATGGTAAACATTGGTGGACAGCCATTTTCAGGTCTCTCCAGAGATGCTCAATTGAGTTTAGATCAGGGCTCAAGAATAGTCACAGTTGTTCCGAAGCATCCTTTGCTGTGATATAtcagtttttACTCTCCCACCACAGACCCGAGGTCCAGCTCAGAGAAAGGAGCACTACACTGACCCAGCTGAGCTCCCTCACCGGGGGCATCGCTCTCCTGCGCTCCCTCCATCTGAACATTACCACCATCCCCGGGATCACCCTCAGACCCCCCGGCCTGAGACTGATCCGCAGCGGACTGAACAATAACCGCGCTCGCGTCACTGAGAGACACTGCACCAGCCCCGCTCTCGCGCTCCGGATactgaagctgtgtccaaaGAAAAAGAGCTCCGCTGCCTACACCTTCTGCAAAGCCATGGGCCTGCTGGGCATGGGGTTCCACCTGTTTGAGAACGAGTACTATCCTCATGCGATAACCATCGTGTCTCCGATATCTGGCTCGGATAAGAAGCAGGTGCTGAACTTCTGCACTCAGAGCTCTGAGGAACTGCTGAAGTTTGTGGAGGATCTGAAGGAGTCCATCGCGGAGGTGACGGAGATGGAGCAGATACGAATTGAATgggagCTGGAGAAGCAGCAGGGGTCAAAGACTCACTCTTCCAAAAACAACGGCACCCAGCTGGAGCTCAGAGGGAGACAGAGTTCTCCATCGGGTAAGAGGGACATTGAGGCGGTGGCGAGTGGACACAACGCGGTAGAGGTGTCAATTCACAACAGGCTTCAGACGTACCAGCTCAGCGCGgcggcagcagcggcagcagcagcggcggtgCAACCGCGGAGCCCAGAGAGCGTGGCCCTTCTTAACCACCGGGGGGAGCTCTACCAGCAGCCCCAGCCGCCACAGCCCCAGCATCAGCCGCCGCTGCAGTGCGTCAGCCCCACGCCCTCGCACTCCTACCAGCCCATGGCCGCCCTGAGCGACCTGCGGCCCGACACGCTCATCCAGTGCCAGCAGATCGTCAAGGTCATCGTCCTGGACAAGGGCGGCCACGGGCGCGTGGAGGCCTTCCTCAGCCAGAGCCCAGcgcaccaacaccaccaccaccaccaccatcaccagcaGGTCATCCAGTCCGTCGTCTCCACACCCGTGCGCTCGCCGGACGGGGGCGGTTCCCAGCGGGAAAAGGACGGTTCCCAGCCCCCGCTGCCACCACCCCCGCCACCCTACAACCATCCGCATCAGTACATCCCCCCGGACCCTCGCTTATCCCTACAGAGGACCCCCAGCGGCTCTCGAAGTATAGTGTAGAGCCCAAGAAAAGAccctaaatatctaaattatatacatatgtattaaGTTATATGAAAGAAATGACCTTCACACCTtacgtatatatgtatatatatatatatatatatatatatatatacgcttACCTTTGACGTCACctgctgtgtgtatatatatatatgtaaagactGTAAAGAGATTTAATGAGAAAagatatgagaaaaaaatacatatctaTAGGCATATATATTTAAGCTACATgaattaaatgaaacaaaaaaataggattgaaagtgaaaaaagaaaaatatgtactttattattattaatatgtacCTTTTCAGAAATATGCGAAATAAGAACAGAAGAAATGAAAAGATCTACTTGATTTACTCCTGTGTATTTTGAAcaagaaaatgaacaaaaaaaaaacatacgtaGTTTTAACAAATTTAACGAATTCTTTTTGAAACAGAGCTCCGACAGGTTGTCCCGCTCAGAATTTCTCTGGTATTTTTAGAGCTAGGCTAGAAAATGAACTTTACGACCCAACAACATGACCTGAGTCCGGCGGCAGCCTGTCCACGAGCCACTTCTGACTTCTGATTGACTGATATCTCAGTCTTTTATTACCTTACTGTAATACCTGTTTGTACCTGTGTGTACGTACGTATGTGCGAGCATTGGACTGGCGGATGATGTACTGTACGTGCCAAAATGAGAACAACCCTTCCCCCTTTACACCCCACGATGAAACCGTTGCACTCTAAGAAAGCTTAGGGCTAGATTGGACTTTTGCTTATGTGCTTATGATACTGTACCTTTTTTGGCTTCCCTCAAGGACTGTGATGATAAAGAGCGAAACAATTGAATCGCAAATTTGAGAAAtctgaacaaaaatatgaaaccGGCAATATTGCTTTGTAAAACTTTTGTTGAAACCTTTTGCCTCCATATATATATGATCAACTCTGTACTTTTTCGGAATCCAAACCTACTAAACAACTAGACATGCATTGGTTTCTTCTCCTGGTATTCATATTTAAAAGCaggtacatacagtacagtatatagtacAGTAAAGTTTGAGGACGACACACGATGACCAATCACGGCTCACTGCCAAACCGAGAGCCACCAATCGCAGCCAGTCTTCGGGAACCCTTCGCAGTGGCTGTTGTTCTCTTGCTCAGGAATCCTGGAACGTATATGTGAAGGCAACAGTGGCGGTGTCAAATCTTCGTCAGGTCTTCGTCAGGTTCGTCGAGAACTCCGTCAAGAAATTTTGTCGCAAActtcgttaaaaaaaaaaaaaaacaactaaaaactaTATGTAGCATCTTCAGAAAGCAGGAGGCACTCACGACAAGGAGTTTTTATCTAGCTTCCCTTTTTTTGGACACTAATATCCCAAAATGTCTGTCGGTGTCATCTTTACGATGTTCCCTGACGGATATATACTGACCCTCGCTCCCTCTATCGTTAACTCTCTTGTCAGTGTATCATCATGTTCAGTACTCACTGGCTTTATTGAACTAATCAGTCACCCCTAACAGACCTGGACATACAGTAGTACAGTTCTGGTCAGTTTCACAATCGGTTCTCTTTCCTGTAACTTCTCCTTCCTGATGACCTTTTGTTTGGCCTTTTCAAACTTTAAGTGACACTTGAAACATCACCTGATGCGCGTCTTCATCGCCGTCGCCGTCGTCGTCAGCACAGAAACACTTTAAACCTGAATGTTCGTCTGCTTCGCTCTGATTGGAGCCGGAGGATGGAAAGGTTGAACAACggctttgtttgtgtttgttttctgtttgtttccaAGTGTGTAAATATCATATCCAGAGCCTGAATGGGGGAGGAGTCCACGTCGATGTCAATGTCGTTTCAGGTCCAGTAAATGTTACCAGTCCACGAGCCGTCCTTATCGGAGGTAGGTCATCGTCTGCCTGGTCTGGAAGCCTCCATGTTTTAATCATGAGCACCGTTGGCATGTGTTGAATAGGTGTTCCTCAGAACTCCTCTGCTCTGTTATCAGCACAGAGAGCTTTGTTCATAATTACATTGCTGCTGTTTGGAGCTCTACTATCTGATCCTGTCTCCCTCATTTCATTCcccttcatttcatttcatttccatATAGGGTAACAGAACAGAGGATGCAGTTTCAGTTCCACTGTTAGGAGAAGCAGAGGAGGAGAGAGCCAATCTCGTTAGAGCTGGTGAGCAGTCAGGGTTGATTTAGAAGATACAGACTTGTGTCGATTGGACAGCAGCAAATTGACTATCCCCATCTATTCCCATCTACTCTCCTCATTGCTGCACCAGCCTGCACccacaaaccaaacaaaatgagCCACCCAACTTGACCTCTGTCCTTTACTAAGGAGAACACCATGCTTCCTCCATCTGCCAAGTCTGAATTTAATTGGAAATTTTGGAGACCTTGGAGATATGGGGCTGTATTACAGAAACAAACAGTAACAAATTTTCAAGTATATCCACAGCATCttattttagggtgtttttacactgtttactttggttaaaacaaactctggttCATTTGAACCCTCGGTAAAGTTCATTTTGGCTGAcgtgaaaacagtaattgctCTCAAGTGAGGACCAAAACAAACGCACTGCGACCCACAAGACGTCTCCATTCAGTCCCAAACCAAATTTAGAACGTTTGATTTTCTTTGAGAGAAAGAGCTGTTCagttgcagtttaacctgatttattacccacaTAATGaatacagctcttaaaaaaacGCTCtctatgctgctgctgctccatgctaagctgtttgcacatttactgtaaaatgaatGTGCAGCGCTCGCTGCAACATAAGTTAGACATGAACTTTTTTTGTGAACAAGAACTGtctattttaatcatttgagCTTTGAGCACGCAGTGTTGTAAATGTGGTTGCTATTAAAACAAATGctttaccattttaaattattattattatgttgcaTGGCCACAAATCCAATGCATATCCAGTCTAGGTCCACATCTCACTCAAAGgaacttaaatctgatttggcatCTCCACCAGTCCTGATAGAGAAGTcacattaatgcaaaaaaaatctgatctgatctgaagtagttttagcctggtaatgtgaatgttcTTTAAATCTTTCCTCATGTTGAGAAAATGAGAGACCCCACGCATAAAGACATTTTTCACAGATTTTTCGGTATTATAAAAGAGCAAGTGTACGACCCTTAAAACCTTGTGGGAGTTTCTTACAAACTGGAGGTTTCACGTCAATGGATTTTGCTGCtagtttttaacaatttttgctccaaaaaaaacaagaaaaaagaaagaatttatAGGTGATATGTACTTCAATGTGAGTCGAAGGTGAATATATACACCTTGTTGGTCAGCTCAGCTCTCATTGGTTGACAGTATCCATGAGGGGGTCAAAGTTACTTTTCCACCAAAGAATCACTGCAGGATATAGGATACGATCGGGGCAGAGCAACGGCTTTTGGAGAAGATCTAAGcactaaaaaaatttaatttagacACCACCTACTCTAAAGGATTGTATGAGAAgatcattgttttttaaatcacctTAAAATCGTGAGAATATTATTCACGATTGGCAGGAAGATCATATCGGCCTTAAGATGGATTTCCTGCATGATTATCCTGTAGTGTGAGCCAGGCATTACATGTTTCTGTAATTCAGCTCCTACACCTTGTTTtaaagaagtatttttttttacagatttcagACATGGAAGCTCCAAAACCACAAAGTCGGCATCAAATGGGGTTCAAATTCCTTCAGGGTGAATCGATTCCGTCAATAACATACGAATGAAATATTGAGTGAATGCAGTTCATATTTGCCCTCCTCTATCACAGATAGTCCTCCTCACACTCCCTCAGGGGGGCAGCGCGTGGGTCAGGGAGACATCGCGGTGAACTGTGTAGCACTTTCAGTGCTTTTGTGAAGTGCGTGTAGTGCCTGAAACTTCAGACAGAATCAGAGTATTTGTGCTAACGGGGTGGAGGCTTCACACATGCAGCCAAAGGCTACAAAGCTAACTCTGGATTTAAGTGCTATTGAAAGGGCTAGTGCACTGGTACCTGAGTTCAAACCGCACTGACTCTAAATCAGGCTGACAGGGTGTACTCGAGGGGCTCGGACATCGGATTCGGATCTATTCGGTCACATTTTCCCCGTTTGCTTTGACCCGTTCTGTTCTCTGTCTATGCGTTAACGACATGCTATTAAACTTATTTCTGTCTATACTCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85825 lncRNA downstream 4260 12800465 ~ 12803555 (-) True G63607
TU85755 lncRNA downstream 220338 12582777 ~ 12587477 (-) True G63552
TU85738 lncRNA downstream 269438 12534965 ~ 12538377 (-) False G63540
TU85742 lncRNA downstream 269438 12534965 ~ 12538377 (-) True G63540
TU85733 lncRNA downstream 278174 12527889 ~ 12529641 (-) True G63538
TU85895 lncRNA upstream 130874 13158372 ~ 13162362 (-) True G63662
TU85898 lncRNA upstream 132021 13159519 ~ 13166674 (-) True G63664
TU85903 lncRNA upstream 145869 13173367 ~ 13198835 (-) True G63669
TU85931 lncRNA upstream 204653 13232151 ~ 13237489 (-) True G63692
TU85942 lncRNA upstream 297058 13324556 ~ 13324875 (-) True G63701
XM_022671361.1 mRNA downstream 108333 12691590 ~ 12699482 (-) True LOC103024791
XM_007234956.3 mRNA downstream 118780 12684226 ~ 12689035 (-) True LOC103033667
XM_007234950.3 mRNA downstream 307152 12373176 ~ 12500663 (-) True slc2a13
XM_007234940.3 mRNA downstream 448074 12330033 ~ 12359741 (-) True LOC103029428
XM_007234949.2 mRNA downstream 487490 12255305 ~ 12320325 (-) True LOC103029962
XM_022671365.1 mRNA upstream 222154 13249652 ~ 13260256 (-) True LOC103034510
XM_007234961.3 mRNA upstream 368987 13396485 ~ 13422065 (-) False scyl2
XM_007234960.3 mRNA upstream 368987 13396485 ~ 13422065 (-) True scyl2
XM_007234963.3 mRNA upstream 396140 13423638 ~ 13432932 (-) True depdc4
XM_022671370.1 mRNA upstream 425458 13452956 ~ 13469076 (-) False LOC103026355
TU85708 other downstream 442076 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 2396584 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 3185027 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 4634013 8166678 ~ 8173802 (-) False LOC111192870
TU84254 other downstream 6069867 6735163 ~ 6737948 (-) True G62484
TU86395 other upstream 1757823 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 1966666 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 3557567 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 3854837 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 3854837 16882335 ~ 16887903 (-) True G64492

Expression Profile