RNA id: TU85825


Basic Information

Item Value
RNA id TU85825
length 3050
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G63607
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12800465 ~ 12803555 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cTTTATTGTGAACACCGGCTATAAACACTTGCAGCTCACGTCACAACTATGCAATATATCTTTAGGGTTAATCAGCCTTTagaatatatacacaattataTTCAGCACTCCATAGCTTATATTACATTCTGTACAACATTTACTGTCTTTCAGTATCAATCTTCAGCACACTGTATTGCATTAAGTGTAGGTCAGAAAGCTTTCTTGTTACTATGAGCGAAGGTGGTGTTTATTCAGGCACACAACAACCATACCTGATGGTTCAGAGGATCATACAAGGTTTCTCAgatagattttttgttttaaactatTGCTTGAGTGGACAAACTGTAtagaacattttattatattaatgagACATccactttaaaatgttaagCTGCACACATAATTGCTCCTGTATAAATGGAAGTgatttttaaactgattttctttagtttaaatggaagacaatgtaaaatagtttatacaagtaattttggagcatttctattggttcatttttGATGAAATTGTGACATCTTTTACCAAAACGTTGAAAATGGCTAAAACATGGATTTAAGGTTTTTATGGGTCAGCAACAATATATACACATCAGCCATATTGTATATAGGTGTTCTTAAAGTGGATGTgttaaagctgtaaaaataGGCAAGTAATGCCTAGACAACTGTACAAGTTGTGTATGATGCTTTGAGGAACCGTCAGATGAAAGCTTTTAGAAGAAAAATGCTTGACTGAAATACTTGAATGTTCCTCATAGCACATTAAGGGCTTCTTCCAAGGTTTAAAGTTTAACAAcctcaaaaatgtttttcaacaGTTGAGACTGTGTTGCGGGTTTGCCAAACCACCATAGGGTGCTCTCTAGTGAGTCCAAAATAAAAGGGTTCATAGTTGATAAAgaaactgaaatatattttaaaaataactcaacacagaaaaatatcaaatgttttagtattttagaCATCTATTTTTTACAtccttttaaactcagcaaccagtcagctcacagtagcagtaatgctagcacCCTTACTGCCTAAAACCTTTTTGTTGtagaacaaattaaaatatacaggTTTTATctgataaaaatactttatcaTACTTTCTTAAATTTTCTAAAAAGAATGATCCTGGACAAACAGTTtagtcctttttttattttgatttgctCCATTCACCCCTATTCTTTGAGGACTCACTCATGGGCTCCCTCTAGCATTAAACAGACATTTTCTGATTTGTAACAGAGGAACAGGAAGTGGACAGGCTCTCTATAAACAGCTTTTTCTATTTTAGAAGATACACTGGTTGGACATggggttctctctctctctatacaatCCAATTGACTGTAGCTAGACGCTGTTCTTGACTCACGACCGCCAACTGGTCgagatattaaacctgctagatgtTTGCAGATTGCTGTGACTTATTGTGAACTGCTGTATCTTCCAGCAGTTCACAATACACAacaaaaactgaactaaactcaTGTAGAATGAACTAGGCATAATGAGAATGAGTGTCCAAAGCTCACTGATGCTTATGGAGGTCCCATCTCACAAGTTACCTGATTTGAGGTCAGTGGTTAGTTCTGTTTTGCTGTATGTAAAAGAtacatatactttttttttttttttttgcattttagacCTTATATAATTtccacatttaaaatcctttaattatcCCAAAAAGTAAGTGCACcttatacactctaaaaagtgattttgtgttttagtcaggagaactaatattatcaagttaaGTGAACTAACCGGCCAgcacaactcaataaaatgagttcagagaacttcaatctgaaaacttgaaaatatggGGGGTAGAACCAATGaacTTCTAGTATAATACcctgtcaatgtttttttacagtgctggtacatacagctttcccatcaGGCTCCTGGCACTGTATATTTGCAttttgggtgtggcctctcccttactttaccatctttgtgttgtctgttgcccaaagctaccttatcctgggcatgCATTAGTGTAACATAtgtgttgattgccaggcctcagtgtttgtagcctttgttctgtgttcctagtgatcacagtatgttgGCTTAGAGCTACAAAGTTCACTCTTGTGCTGCCCCAGTgttggggcaaaatatgctaAACATGTTGAAAATgcctatatatattaaataaactacattattTAAGCCCACAGTACTTGAGTTGAgccagtaaatatattttttcagtgtaatctggtgtgccttatgtttgaattttaccagtcagctctagctctttcgccattcagccTGTATCCTAGTGCTCtccacagctagcactgctggagcagaattagcatgctagctcttttgccgttcagaggtacagtaagtattatcggcctgtagcctgctttaTAGTGTTAAAACCAGCTACATGGAAATATAGAtgagaaaaatagaatattatatatagctTGCCTCCTTTGCAACAGTTGCATTGAAAGTACACATCATTGGGTAGTTTTCTGTGCCTGTTTACGTTCCAAATTTCATGCAGTCTATTAGTATTTGTCGGGGCTATAATCCATAGACACATTCATAACGTGCTTTGAAGAGTCTTTGAAGTTGTTGTCCAGAAAGACAAACACTCCAAATATACCACGCTTACAAAAAAGGGGGAAAGCTTGAAGAACTCCACTCCAATACGTCTACAGCTTACAACGGCAttccacacactgctttttacattcaTACTAAACACAAGACTCCTCCCAATGTGAGTCCTGCTGAGTCCCGCAGATGCTTTATACTGGAGGAGACTGGGAAATGGACGAGTGTGACTCCAGCTCTCTCCAGTTGGTGCTGTGTCATTGGCCAGGGTTCTTTCTTTAGTTTATCAAACATCCCCTCTGCTCTCAGAACGATGGTGTATCATCAGAAGGAAGCTTCAGCAATGATCGTTTGATGTCCCAGGATGTCCTTGTCCCCTGAAGTGTTGACCTCGTCAGTGGGCGTGGTCATTTTGTGCCAGCG

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85755 lncRNA downstream 212988 12582777 ~ 12587477 (-) True G63552
TU85738 lncRNA downstream 262088 12534965 ~ 12538377 (-) False G63540
TU85742 lncRNA downstream 262088 12534965 ~ 12538377 (-) True G63540
TU85733 lncRNA downstream 270824 12527889 ~ 12529641 (-) True G63538
TU85720 lncRNA downstream 387883 12373189 ~ 12412582 (-) False slc2a13
TU85814 lncRNA upstream 2416 12805971 ~ 12816418 (-) True LOC103025415
TU85840 lncRNA upstream 48719 12852274 ~ 12854361 (-) True G63617
TU85895 lncRNA upstream 354817 13158372 ~ 13162362 (-) True G63662
TU85898 lncRNA upstream 355964 13159519 ~ 13166674 (-) True G63664
TU85903 lncRNA upstream 369812 13173367 ~ 13198835 (-) True G63669
XM_022671361.1 mRNA downstream 100983 12691590 ~ 12699482 (-) True LOC103024791
XM_007234956.3 mRNA downstream 111430 12684226 ~ 12689035 (-) True LOC103033667
XM_007234950.3 mRNA downstream 299802 12373176 ~ 12500663 (-) True slc2a13
XM_007234940.3 mRNA downstream 440724 12330033 ~ 12359741 (-) True LOC103029428
XM_007234949.2 mRNA downstream 480140 12255305 ~ 12320325 (-) True LOC103029962
XM_022671173.1 mRNA upstream 4260 12807815 ~ 13027498 (-) False LOC103025415
XM_022671365.1 mRNA upstream 446097 13249652 ~ 13260256 (-) True LOC103034510
XM_007234961.3 mRNA upstream 592930 13396485 ~ 13422065 (-) False scyl2
XM_007234960.3 mRNA upstream 592930 13396485 ~ 13422065 (-) True scyl2
XM_007234963.3 mRNA upstream 620083 13423638 ~ 13432932 (-) True depdc4
TU85708 other downstream 434726 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 2389234 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 3177677 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 4626663 8166678 ~ 8173802 (-) False LOC111192870
TU84254 other downstream 6062517 6735163 ~ 6737948 (-) True G62484
TU86395 other upstream 1981766 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 2190609 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 3781510 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 4078780 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 4078780 16882335 ~ 16887903 (-) True G64492

Expression Profile