RNA id: TU85950



Basic Information


Item Value
RNA id TU85950
length 3650
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G63709
representative True

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13397632 ~ 13401310 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TTTTCATCTGACTTTGGAACATTACTGCCGTTTCTTAAAGGTCAACATAACAGGAGGTTAAATAACGTAATTTCTTCTTACATATGGCTGGTGAATAAGACCCTCTGCTCACAAATCAATTAAACAAACTTCCAAAATTTCCAAATTACTTCTCTGATGACAATCCAGTGTGTAATTCATTTATTGAAAACAAAGCCCAGATACTGCTTAGATATGAAAACTGCATGTGTTAaaacactcactcattcacatcAAGCCTTTTACAAAACCCTTCAAAAGTCCTATTATTGCACACCTCTCTTcataaggcttctgttttttctccattcatTCACTCGTACTCAGAGGTCCCCTTTGAGAAAGTGATCAAtagataatatattaaaaaatcctAACCCATATCAAATAAATCTCAATATACTATACACTTCATTCACTATGATATGTAAATACTATACACAGTTCTAGGAGAGTGGCTCGCCGTGTCTCAGCTATCTATTTGGTCATGATGAGGAATAAAATGTTAAGCTGACCGGTGTGCGGCTTTTCTTCTCtgttcttgttttcttgtttgttttttttaaacccctCCCTCCACCCACTCTGTCCCAGTACTACCATCACATTGGCTCCAGTGCAGGTATGATCAGTAACATgcaacaaaagaacaaaacataTTGTCACTCTTGGACAAAAACCTTATATCTCACAAATTGCAATTTTACAGTACAGAAAAAATCCTTTTTgacttttaatgaaagtcaatgtaaaaagattgaatttgttaatttgtttctattggtccattcatcaggaAATTTAGACAAAACTTTAAAGAActtgaaaaacagaaaatgagagactaaagatttttgcatgacagcaacAATAGGTTACTTACAAAATATATGGACGCACACCAGCTGGACAAACATAggtacacaaacatacataaacagACTTTCTAGTGAAGCTTTTAAAGGCCAATAAagctttttaatattaaaagtgtTACTGTCTTATAACCCATAAAACTACACAAGTtgaaataattgaaataattaCTACCTATTGGGTTTCAGCTAATCTGTATTTTTATGCAGATAACTTCATTGGCGTTTAAATGCTTCCATACACTTCATTATACTGCGGATCTAATGAGAAATCTGCATGTTTCATTAAACTGCACATAACACTCCAGTGTGCAACCCAGCAACTGTTATATAACCccattctgaataaaaatacaaaaacagaaaaaggcaGAACCCAAACAgatacattaaaaacaggttCCCTCCATTATTTTGTcatcacacacattctcacacacacacattcaaacaaacagcagagataaaACATTCCACCTTTTCTAATGTTTTCTTTGTAATCTTTTCTGAGACTTCGGTCATGTTCATTTGCTCAAATGACAGAAAACGAAAGTGGTTTAAATCGGACCTGAAGATACATGGCTAGTGTGAGGAAAAGATCAGTTAAATgaggaagaaggaaaaagcCTATTGGTCTGCCTGCCTAAAACAAAGCTAAAGTGCAGCCTTCTCAAACTTCATCCATCCACAGAACTATAGAGGAATAGTGTGACATGGTCTCAGTACTGGATGGACAGCAATTAAAGCAATACTTCAATAGTTTCAGCCAGATCTCTGTCTGCAGCATTCATAGCGCACACACTTAGTAGAAGCCACTTTGCAGCAATTGTTGCAGCAGTACAGTATTGTTTTGCTCAGTACAGTACTGAATTATTGTGGTAGTAAGTAAGTTATCAGTATTGCGATACACACGGACATGCCAAGAAATCGTTATGTTAAATGATTATAAAGTGTCAACTTAGGACGGTTTGGGAACATCAACAGCTTTataaagttgtgaggtgttatcatgtGAATAAGGTTgtacactggccagtgtgctcattgCAAGGTAACATGAATTAcaggagttggagtgaggtgtaGATGGATGGGACGACGTTCCATTTCTGAACTTGTGTGGGTATTTAATATTCCTCCATCCACAGTTTTAGGTGTGTACCAGGAATGCATCATAATGTACCTATACACCCTTAATAATTAGGCCTGGTTAGTTGGATTTAGTGCagtttatacataaaaaaaatcaccatactgtgattctgtgatactcgataTATCGCAAGGATAAAATCCTCAAAtaacaggaattatggatttattggtctcagtttcacagaattaaaCAACCAATATTCCTtactgcaggtttaccctatcATTAGATTAGCACCGCAACatggagtaataaagcagtaatatcAGTAATCAAATTTGGAGACAAGTCTTAGGAATTTCAGAttgcctatgtttcaataaatatatttacatttgatGCCACTTATTGATAATGTATTGCGAACAAAAACGatacaatatatcgcaataCTGATATTTTCTCCCACCCTATTAAGCACATGCcattttaataatacaaattacCGTAAAACAGTATTGAGATATTTTAACGTGTGGTATAGCACCCACACCAACCACACGCTAGAGATGAAGCAGACAAAGATTAGGCTGAAGGTGTTCGGCTCAAGTACTTAGTGGAAGATTCTCCACACCTTGCCTGCGTGTCTGTTGTTAAGAAtgtttgtatatgtatgtgtatagaCCTCTGGTATGCAGTACTCAGGCAGAAATACCAGTAAGACGAGTGTGATGTATAGAAGAAATATGCATGAACCTGCCTGCTTAAGGCTGGTGGCCGTCTTCTGATTTACTGatgctcaaaaaaaataaaaataaaataaaaataaaaaggtccaCCACAAATTATACAGTTATACACAACTCAAAATTAACCAGatgaaaaacaaagcaaaaagcaGGCAGTGGTTCATTAAGATGGACTATAAAGATCTTCTTCACCCTCATATTTATCCACGGCATTGTTGATATCATTTCCTTTAGAGCTCTCTGTTGATAGGCAAATAGAAAGAAGAACGACAGTCAGCCAGAACTGGTTTAACCAAAGAGGTCCTTCAGATCGTTATTGACCGAAGCGCTCTGTTTCAACATTCCCGTGTTCATGGTGGGGTTAGCTCCAGCTTGTGAGAAGTTCTGTGGGTTAAAGAAAGGGTTAGCTTGCATTCCAAACCCACCTTGCGACCCTGCTGCTGCCATGCCAATCGGTGCTGCCTGCATGCCGGCAGTCTGCGAGGGCTGGCCTGCACCGAACTGGTTGAGCCAGGGGGACGGGGCGGCAGGGCCGGCGACTGGTTTGGGGGTCATTTGGTTCAAGCTGACTTTGGGCTTGCTAGCAGAGAAGAGGGAATCCAGGGCTGACATGTCCGGAGGTTTGCTGGGCTGAGTCTGGTTCTGTGTGAGGGCGCTGAAGTTCGGGGTGCTGGTGGTGGTCGCCATCCCTCCGTACAGGCCAGGGGTGGCTGGCCGCATTCCCATGCCCCCAGCGTGGAAGCCCATGTTGGAATTGAAACCATTGTTCATGGTACCCATGCCACTCATGTTGGGTCCACTGGAGAAGCCAGAAGAGAGTGCGCCTCCAGTCTGCATGGGCGTTGTCCGAGGGCCAGAGCTCAGGGATAAGGTGTTAAGTGAGGTCATGTTGTTCAGTAGACTGCTGGTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85704 lncRNA upstream 72124 13325300 ~ 13325508 (+) True G63514
TU85694 lncRNA upstream 86461 13257901 ~ 13311171 (+) False G63510
TU85987 lncRNA downstream 50436 13451746 ~ 13509597 (+) True G63738
TU85993 lncRNA downstream 71124 13472434 ~ 13475420 (+) True G63743
TU85999 lncRNA downstream 85089 13486399 ~ 13487618 (+) True G63749
TU86006 lncRNA downstream 139851 13541161 ~ 13542001 (+) True G63756
TU86005 lncRNA downstream 141303 13542613 ~ 13543511 (+) True G63755
XM_022671367.1 mRNA upstream 1369 13386540 ~ 13396263 (+) True LOC103026035
XM_022671368.1 mRNA upstream 2063 13386538 ~ 13395569 (+) False LOC103026035
XM_007234962.3 mRNA upstream 15717 13369680 ~ 13381915 (+) True LOC103036201
XM_007234959.3 mRNA upstream 94520 13271177 ~ 13303112 (+) True st8sia1
XM_022671364.1 mRNA upstream 154890 13210222 ~ 13242742 (+) True LOC103034836
XM_007234964.3 mRNA downstream 32259 13433569 ~ 13445672 (+) True usp44
XM_007234965.3 mRNA downstream 106068 13507378 ~ 13539050 (+) True fgd6
XM_022671371.1 mRNA downstream 143642 13544952 ~ 13557590 (+) False LOC103030426
XM_022671373.1 mRNA downstream 145629 13546939 ~ 13557590 (+) True LOC103030426
XM_022671372.1 mRNA downstream 145630 13546940 ~ 13557590 (+) False LOC103030426
TU85654 other upstream 236312 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 738114 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 928730 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 3747545 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 3957068 9433437 ~ 9440564 (+) False LOC111192948
TU86374 other downstream 1343425 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 3020924 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 3037910 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 3351733 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 3431986 16833296 ~ 16864454 (+) False LOC103030423

Expression Profile