RNA id: TU86006


Basic Information

Item Value
RNA id TU86006
length 841
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G63756
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13541161 ~ 13542001 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttctgaggaaaaaagtatggaatcatgaaaaacagataaacaaaagatgattcaaaatacatcactagtatttagttgcaccacctttggcttttataacggctttcagtctctgaggcatggacttgatgagtgacaaacagtattctgcatcaatttggtgccaactctctttgatagcagttgccagatctgctttgcaggtcggagccttcttgtggaccatttttttccatttccaccacaggttttcaattgggttgagatctggactatttgcaggccatgacatcgactgaatgtgtctttctccaaggaatgccttcactgtttttgccctatggcacgatgcattgtcatcttggaaaattatttcattatctccaaacatctgttcaattgaagggatgagaaaactgtccaaaatgtcaatgtaaacttgtgcattgatagaagaattaaccacagtcatctccccagtgcctttgcctgacatgcagccccatatcatcaaggactgtggaaatttggttgttttcttcaggcaggcctcttcataaatctcactggaacggcaccaaacaagttccagcatcatcaccttgtccaatgcagattcttgactcatcactgaagataactttcatccagtcatccacagtccatgattgcctctccttagcccactgcagtcttgttcttttatgtttaggtgtcaatgatggttttcttttagctttcctgtattgaaatcccatttcctttaggcgatttcttacggttcggtcacatacattggctccagcttcttcccatttatgcttcatctgtttagttgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85987 lncRNA upstream 31564 13451746 ~ 13509597 (+) True G63738
TU85999 lncRNA upstream 53543 13486399 ~ 13487618 (+) True G63749
TU85993 lncRNA upstream 65741 13472434 ~ 13475420 (+) True G63743
TU85950 lncRNA upstream 139851 13397632 ~ 13401310 (+) True G63709
TU85704 lncRNA upstream 215653 13325300 ~ 13325508 (+) True G63514
TU86005 lncRNA downstream 612 13542613 ~ 13543511 (+) True G63755
TU86075 lncRNA downstream 31719 13573720 ~ 13677259 (+) True G63791
TU86106 lncRNA downstream 169908 13711909 ~ 13713440 (+) True G63813
TU86129 lncRNA downstream 212864 13754865 ~ 13755370 (+) True G63827
TU86260 lncRNA downstream 625228 14167229 ~ 14242233 (+) False gata3
XM_007234965.3 mRNA upstream 2111 13507378 ~ 13539050 (+) True fgd6
XM_007234964.3 mRNA upstream 95489 13433569 ~ 13445672 (+) True usp44
XM_022671367.1 mRNA upstream 144898 13386540 ~ 13396263 (+) True LOC103026035
XM_022671368.1 mRNA upstream 145592 13386538 ~ 13395569 (+) False LOC103026035
XM_007234962.3 mRNA upstream 159246 13369680 ~ 13381915 (+) True LOC103036201
XM_022671371.1 mRNA downstream 2951 13544952 ~ 13557590 (+) False LOC103030426
XM_022671373.1 mRNA downstream 4938 13546939 ~ 13557590 (+) True LOC103030426
XM_022671372.1 mRNA downstream 4939 13546940 ~ 13557590 (+) False LOC103030426
XM_007243321.3 mRNA downstream 19435 13561436 ~ 13565100 (+) True ndufa12
XM_007234970.3 mRNA downstream 49611 13591612 ~ 13633235 (+) True tmcc3
TU85654 other upstream 379841 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 881643 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 1072259 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 3891074 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 4100597 9433437 ~ 9440564 (+) False LOC111192948
TU86374 other downstream 1202734 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 2880233 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 2897219 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 3211042 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 3291295 16833296 ~ 16864454 (+) False LOC103030423

Expression Profile