RNA id: TU86026


Basic Information

Item Value
RNA id TU86026
length 1360
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G63766
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13444767 ~ 13447799 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttgtctgttttcttttctagaaaaatgcaaaaatattattttattgaggTAAATTTCTCTATAAATTGAGGTAACAATTTGCATAGTTTTACATCTATACCTGCTGAAAAGTGTTGAGCTGTGGACTGAAGAGAACCGGATACAGAGGCAGATGATTCCGAGGGGTGTGCGAGATTCAAAACCAAGAAGAACTACCTCCTTCCTCACacatccacacaaacacactcaaacacacctaCATAGAGAAGGCGCTAACCACAACAGTGACAAAATGCATCCAATCAGCTACTAAaacacttactcactcactcactcactcactcactcaaacacacatactCAAAATCATACATACAGGTGAATGATGTACATACAGCATACATTTTGCCTTTGCTGGtgacaacagttttttttttctctctaaaatcattttcttttgtaaaaaaataaaaaatcttgttTACCCAAGAACTGAGTATATAAAAGTACATTCTGGAAAgtctaaacataaaaaagaaaacaatccTGAATCATTTAGTCATGCTCCAAATACTCGAAAGGAGCTGATAACACTAGAACAGACTTAAAGAACTGGTCAACAAACATGGCAGGGCACTTTATAAGGGGACTGGGAGGGGAATattgtcagtttcacacaatcaaacaacacacacacacacacacaatcaaacacacacacttctgtgaTACTGACATCACAGTGATGCCTTTTGCAACTTTGTCCCTTTGTAAAGAGGGCTGAAGCAAATCAGAACAGTCGACATTCAAAAGTTGTGTTTTTCTACACTTTGGTTTGTGGGCAgtattcagcaaaaaaaaaaactgcgtTAAAGtttacaattaaaacaaaattaaaagaccCTCTCAGACTCAAAAACAAGCTGCAATAATGCTAGAACTGACATCTTGACTCTTACTTAACtctcttatatacacacacgcacgcacgtacaccacacacacacacacatacacacagctacAATCACTGCAAGAGTGCCAACTGCCAAAGATCTGTGTAAGGcattaagagcatttccacaacggctgaatgctgctgctgctgctgctgctactacagATACAGAAACGCCTGcatacgcatacacacacacgcgtgcAGACTAACTTTCTTAACATCACCATCGTATCAACAgaatatacaatacaatgtCTCTGTGGCTGACTGGCTGCGGAGTAGGGGTCAGAGGTCGCTGGCCTTGCCTTTGTCCTGAGAGCTTCTCTGGGTGTAGAAGAGAATGTAGGCCTGCGCCTTACACACCTCCTCCaccgcacacacactcagcttcGAGTCATTACAGTGCACCCAAAATcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85945 lncRNA downstream 99346 13345150 ~ 13345421 (-) True G63704
TU85942 lncRNA downstream 119892 13324556 ~ 13324875 (-) True G63701
TU85931 lncRNA downstream 207278 13232151 ~ 13237489 (-) True G63692
TU85903 lncRNA downstream 245932 13173367 ~ 13198835 (-) True G63669
TU85898 lncRNA downstream 278093 13159519 ~ 13166674 (-) True G63664
TU86041 lncRNA upstream 94827 13542626 ~ 13543525 (-) False G63773
TU86043 lncRNA upstream 94827 13542626 ~ 13543568 (-) True G63773
TU86134 lncRNA upstream 113560 13561359 ~ 13562094 (-) True G63830
TU86164 lncRNA upstream 310464 13758263 ~ 13760003 (-) True G63849
TU86167 lncRNA upstream 316965 13764764 ~ 13769051 (-) True G63852
XM_007234963.3 mRNA downstream 11835 13423638 ~ 13432932 (-) True depdc4
XM_007234961.3 mRNA downstream 22702 13396485 ~ 13422065 (-) False scyl2
XM_007234960.3 mRNA downstream 22702 13396485 ~ 13422065 (-) True scyl2
XM_022671365.1 mRNA downstream 184511 13249652 ~ 13260256 (-) True LOC103034510
XM_022671173.1 mRNA downstream 417269 12807815 ~ 13027498 (-) False LOC103025415
XM_022671370.1 mRNA upstream 5157 13452956 ~ 13469076 (-) False LOC103026355
XM_022671369.1 mRNA upstream 5157 13452956 ~ 13469076 (-) True LOC103026355
XM_007234968.3 mRNA upstream 26524 13474323 ~ 13507294 (-) False vezt
XM_007234967.3 mRNA upstream 26524 13474323 ~ 13507294 (-) False vezt
XM_015601791.2 mRNA upstream 26524 13474323 ~ 13504253 (-) True vezt
TU85708 other downstream 1079028 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 3033536 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 3821979 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 5270965 8166678 ~ 8173802 (-) False LOC111192870
TU84254 other downstream 6706819 6735163 ~ 6737948 (-) True G62484
TU86395 other upstream 1337522 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 1546365 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 3137266 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 3434536 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 3434536 16882335 ~ 16887903 (-) True G64492

Expression Profile