RNA id: TU86043



Basic Information


Item Value
RNA id TU86043
length 943
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G63773
representative True

Chromosome Information


Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13542626 ~ 13543568 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


tgaacttaaaattatttattacagctGTATTTTACATCTACATCTGTCATATAAAGGGAAATACTTGGAGTGTTTTGACTTATAACCCCAACCAGCTGGAACGGTGACAAGTGACTTCAAAAAACAGCAGATAAAATCCCAAAGTCTTTGTGGCAATTCAGTGTGCACTGCACTTGTGCATTTTGTCCCATTAAACCACACATCATCTTCCCAAGGAAACATCCTGACACAACATGTTATTCTATATCACAATTAAACTCAGaatacagacacacatacacacacacacacgcaaacacaaaCCTGGACATATGGAACTTATTCAACCCTATAATGGGTAATACTGTGAAAGTATGAACAAAACATGTGACATTTAGTTTGACACAATCAGTTTAACACAAACAAAGAACATGGTTTTGTTGTCATCCCAAAAACAAGGTGCACacacaattgtttttttaaccagTAAAGAAACTAATGTGTTAATTTCCCTGATAAAAGAGAGAGCTAACAGTTTTCACTGAGCTGGGGATTTATTCACAGCTTAGAATGCTATGATCTGTATTACACAGCGATATTACATAGTGCTTAGTCAGCTGAAAACTGCGATTCTTTGttaaattatacaattattaaattgttgtttttttttttaaatacacctgCATTATATTACCATGTACAGAATATTTACACTTATATCCAGTTATTCCCAGTAAAATAGTTCAACATTTTTACTGCAAGTCCTACTTTTTACaaaaagagaagataaaaaagtttaaaaatgctAAACGTACTATAAGTGTGGTATCTTTTAGTTTAAAGGCATACAGTGACCAAACATGCTAACATGGCTAACAATGAAACATTAGTTTTTACTATTCACTTTTGCTGTGTCCCAATTAtgtacaacccctggcaaaaagtatggaatcaccagtct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU86026 lncRNA downstream 94827 13444767 ~ 13447799 (-) False G63766
TU86029 lncRNA downstream 94827 13444767 ~ 13447799 (-) True G63766
TU85945 lncRNA downstream 197205 13345150 ~ 13345421 (-) True G63704
TU85942 lncRNA downstream 217751 13324556 ~ 13324875 (-) True G63701
TU85931 lncRNA downstream 305137 13232151 ~ 13237489 (-) True G63692
TU86134 lncRNA upstream 17791 13561359 ~ 13562094 (-) True G63830
TU86164 lncRNA upstream 214695 13758263 ~ 13760003 (-) True G63849
TU86167 lncRNA upstream 221196 13764764 ~ 13769051 (-) True G63852
TU86219 lncRNA upstream 297908 13841476 ~ 13842239 (-) False prkcq
TU86231 lncRNA upstream 447687 13991255 ~ 13991792 (-) True G63904
XM_007234968.3 mRNA downstream 35332 13474323 ~ 13507294 (-) False vezt
XM_007234967.3 mRNA downstream 35332 13474323 ~ 13507294 (-) False vezt
XM_015601791.2 mRNA downstream 38373 13474323 ~ 13504253 (-) True vezt
XM_015601792.2 mRNA downstream 38374 13474323 ~ 13504252 (-) False vezt
XM_022671370.1 mRNA downstream 73550 13452956 ~ 13469076 (-) False LOC103026355
XM_022671374.1 mRNA upstream 102828 13646396 ~ 13692850 (-) True LOC103026945
XM_022671378.1 mRNA upstream 168666 13712234 ~ 13755482 (-) False LOC103038708
XM_022671377.1 mRNA upstream 168666 13712234 ~ 13755364 (-) False LOC103038708
XM_022671376.1 mRNA upstream 168666 13712234 ~ 13755364 (-) False LOC103038708
XM_022671375.1 mRNA upstream 168666 13712234 ~ 13755364 (-) True LOC103038708
TU85708 other downstream 1176887 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 3131395 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 3919838 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 5368824 8166678 ~ 8173802 (-) False LOC111192870
TU84254 other downstream 6804678 6735163 ~ 6737948 (-) True G62484
TU86395 other upstream 1241753 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 1450596 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 3041497 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 3338767 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 3338767 16882335 ~ 16887903 (-) True G64492

Expression Profile