RNA id: XM_022671382.1


Basic Information

Item Value
RNA id XM_022671382.1
length 4837
RNA type mRNA
GC content 0.44
exon number 18
gene id prkcq
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13841193 ~ 13887868 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGTATTATTCTGAAGTAAACTTCACCTCCTGTGCTgctcgcatacacacacacacacacacacatgcgcttACACACGCCTACCAAGTAGAACTTCACCCTCTTCCCCAGCAGCAGGCCATACACTGGGAGCTGGAACTAGAGCAGGCTGCTGCCGAAAGGGTGTGTGCTCTGTGCATACTCAGCACCGCCAGGACAGGAGCACAGATCAGAAGCTGACCTTTCCttcaacctcacacacacagacaaacacacacacatacacatatacaaaccCACACACCTCACGGAGGGGTCACCGTGCCCAGGCTCTTTTCTGAGCACATTCATTCACACACCCGCATGCTCCTACACATGTTCAGCTGGAGTGTACTGTATTGAAGAGAGAGGTCTGGAGGAGGTTCTTCTGAACGGATAGAGCTGCTGGAGATCTCGCAGCTGCTGGAACTTTCTGTGTTTCAAATACACTCAGAATGGACTTCCCCAGCATGGTGGACAACATCTAAAGACCCATTGCCGGTGTGATTACCGCCGCTAAGGGGACTTGCAGTGTTAAAAGACCCTCATATTGGAGTTTATCAGATTTTAAAGGAGTTAAGAGAGTGAACGAGTGGAATGATGTCTCCGTTTCTGAGGATTGGTTTCTCCAGCTTTGAAATGGACCCTGGACTAGCCTACCATGAGGAGGTGCTCAACCCCTACTGTGCAGTCTACATGAAAGAGGCTGTGGAGACAGaaAAGGGTCAGGTGTATAAACAGAAGAGGCCCACCATGTACCCGCCGTGGAGCAGCACGTTTGATGCTCACGTCCACAGGGGTCGAGTGATGCACGTGGTGGTCAAAGACAAGACGGCCGAGCTGAAGACTGAGGCCACCGTCCAGCTGGACACACTCGCCTCCCGCTGCAAGAAGGAGAACGGAAAACTGGAGATATGgGTGGAACTGAAGCCTCAGGGCCGTCTGCTGATGGAGGCCCGATACTTCTTAGAGAGAAGTGaTGCGGGTCATGGTGAGGGAGATGGGGAGACTGAGAGGGAGAAGGAGGGAGTGTTTGCGCTGCATCAGCGCCGAGGGGCTATCAAACAGGCTAAAGTTCACGTGGTGAAGTGCCACGAATTCACCGCCACATTTTTTCCACAGCCCACATTCTGCTCCGTCTGTAAAGAGTTTGTCTGggGGCTGAATAAACAAGGATATCAGTGCCGACAATGTAACGCTGCCATCCATAAGAAGTGCATTGACAAAGTGATCGCTAAATGTACAGGCTCAGCCATCAACAGTAAAGAAACCATgATCCATAAAGAGCGCTTTAAGATCGACATGCCTCACAGGTTTAAGGTGTATAACTATAAGAGCCCAACGTTTTGTGAGCACTGCGGGACGCTGCTCTGGGGGATCGCCCGACAGGGCCTCAAGTGTGAAGagtgtAGTATGAATGTTCATCATAAGTGTCAGAAGAAAGTGGCTAACCTATGTGGAGTAAACCAGAAGCTGATGGCTGAAGCTCTAGCCATGATTGAGGTCACACAGCAGGCACGGACCTCAGGCAGGGATAATGAGCTGAGTGGGCGTGAGGGTCCTGTAGGTGTTAGTCAGGCTGGAATGGTGAAAGAAAGCCAAGGCTGTTTACCAATTCATTCACTAACACCTGCTCCACCACTACCACGTAAAGAGCAGCAGGGTATAGCGTGGGACACCCCGCCGCTGCAGGGGGACAGGCGGAGCTCCATCGAAACCTCAGAGCCGCTGTACGCCGTCCCCCGCAAAGAATACCACAAATTCACCCTGGAAGAGTTCACCCTGCACAAGATGCTGGGAAAGGGCAGCTTCGgaaaaGTGTTTCTGGGAGAGCTGAAGGCCACGGGACAGTTCTATGCAGTGAAGGCTCTGAAGAAGGATGTGGTGCTGATGGATGATGATGTGGAGTGTACGATGGTAGAGAGGAGAGTACTGTCTCTCGCCTGGGAGCATCCCTTCCTCACACACCTCTACTGCACCTTCCAGAccaaggagAATCTCTTCTTTGTGATGGAGTATCTAAACGGAGGAGATTTAATGTTTCACATCCAGTCCTGCCACAGATTTGACCTGGTCCGCTCCACGTTTTATGCGGCTGAGATTATCTGTGGGCTGCAGTTTCTACATTCTAAGGGCATTGTGTACAGAGATCTAAAGTTGGATAATATCCTGCTGGATTTCGATGGTCACATTAAAATAGCTGATTTTGGTATGTGTAAGGAGAACATGCTGGGTGATGTTCGCACCTCTACGTTCTGTGGAACACCTGATTACATTGCTCCTGAGATTTTGCTCGGGCAGAAATACGGCACCTCTGTGGACTGGTGGTCGTTTGGGGTCCTTCTCTATGAGATGCTGATTGGTCAGTCTCCGTTCCACGGCCATGATGAGGAAGAACTGTTCCAGTCCATTCGTACAGATGACCCCTGTTACCCCCGGTGGCTCACCAGAGACGCGCGGGATATTCTAATTAAATTGTTCGTTAGGGAGCCAGAGCGGAGGCTGGGCATTAAGGGCAACATTCGGCAGCACTCATTCTTCAGGGACACGGACTGGAACGCACTGGAGAAACGGCAGGTGGAGCCGCCCTTCAGGCCAACTGTGAAATCTGCGAGTGACTGCAGTAACTTCGACAAGGAGTTCATAAACGAGAAACCTCGACTGTCCAGCGCAGACCGGACCCTTATCAACAGCATGGACCAGACCATGTTCAAGAACTTCTCCTTCATCAACCCGGGCATGGCTCGCCTTAAGAACCCCTGAGATCCACACATATACTGACTTCAGCTCTTCAGTGCCAGTCTATTTACACTTATATATGTACAATGATCCgttataacattaaaaccacatgcCCGATATTGTGTAGGTTTAATAAATACCTCTGACCTAGCGGGATATGGACTCCACAAGACTTCTGAAGGTATTTTAGATAATCCAGTagaagtttttttaattttttttttttcttttgtttatcgTTTATtacagttcaaacaacctcactgGCCAAACTCTGGGgcctattgctgacccctggaTTAAACTAGTTCTCTTAGTCCAATAATACATGTTCTCTCAAGGTCTGTAAACTGAGAAAAATGTCTTCGAATGCACCATAgtgcatgtctagcagtcaacaccctctcaccaagaggtgcactacacAAAGGAATCTTCTGATTGGAgtttttagtaaacaaaaatgctgattttatgTGGATGGGCAGGAAACActgagtttttaaaaatatctaaatatgtaTCATGTGGATACTGCCTAAACTTCTAATATAATTCTTATAAACTCCAATAACATCCTAATTAAAAGTCAGTGGATGTTCTGACTGCCTCATCGCCTTGTTCAAGGACAAAAAGGACACTGGATCCTCAGCTCTGTAGGAAAATCTCCTTATTCTTCCCCAAAAACCATTCCCCATATTTTCACCAGCACTGGCTCTGTTTAAAGCATACTCATGTCCTTCACAAGGTCATTAGTGTAAAAATTATGATGAAGAAGCTGTACGTGAGGAACAGGGAGAGGCTAAATGTTCCGAATGCTACTGAAATAAGACTtaattttaaggaacacaagttaggttaggtttaaaTGTAGGTCTTTATCTGTGTTAAACAAGcttaaaatagtatttttattttatttttaaatgtttattaaacatttagattTAAATATTCATCATGACCATCATAgtccaataaataataataaaatgcattattcattattcattttaataatgcATAGTAAACACTTTGATATCACCCTGTTTTATCCCAAATAATTAATATGGATTACAGCTTAAAGTTGCatgttattaatgtgtaattggCAAAACTTTGATTTGTACaatcatacaatataaaatacactCTCTATGTGGATTCAAACACCAAATGCAAATTAAGCAAAGACATTCCTGGGAGAtctttgctgtgtgtgggtgagcattatcctgctgaaaaaaaaaaagccatttgaAAGCCCTGCAGTTAAAGACATGTATCcgcaggatgtcctgcacatatcgCTGAGCTGTTATTGGCCCTGGCTGATGGATGGCCTACATGGTGGATGTACAATGCCCCTTTGTATAATCACGCTctctaatgaaaaacatgtatctccatttttgttgtagatttttagtttctacatattttgaacacacaaactgtcccttacattaCCCatacattgctgttttaaagatacatgtttttcattagacagtgAAGATATAGTCTATTAACTGGACAAAATGTCTCAGATTCAGGAAGAGATAGGTTTAGCAGTAATCAGTGCACAAGCCCAAAGTAGCATCTGATAGCCTAGTAACATTTTCCCCTTTTCGTACTTGTATGTGAAGGTCATGATAAATAAAACCTAATgtatactaaatattaattaatgtattcatttaaacctaacaagaacaaaaaaaaacctcattTGTGTTGCTTAAAACAAAGAGTTTTCCTGTATTTGTGTAGATatgatatataaaacaaatgttttatttataccaGTGTGTGGACTGGTATTTTCAGTTGCATGTATTTAAGTTTCATTTACTCAGTCGGATtaacactcttttttttttttagtattaatgtgaattagtttttttatcagATATGAATTGTCGATGTAGAAATATCTGTAGCTCCATTCATGTAAAAATTCTTCTGTTCTAGTGtatgtgtgcgcatgtgtgaaTAATTGAAATATTGTAGGTATTTGCAAGCATTTATTGTACGTGCTGTTGTAATCTGAGTGAATAAAGtcttatattga

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K18052 PRKCQ; novel protein kinase C theta type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86167 lncRNA downstream 72142 13764764 ~ 13769051 (-) True G63852
TU86164 lncRNA downstream 81190 13758263 ~ 13760003 (-) True G63849
TU86134 lncRNA downstream 279099 13561359 ~ 13562094 (-) True G63830
TU86043 lncRNA downstream 297625 13542626 ~ 13543568 (-) True G63773
TU86041 lncRNA downstream 297668 13542626 ~ 13543525 (-) False G63773
TU86231 lncRNA upstream 103387 13991255 ~ 13991792 (-) True G63904
TU86283 lncRNA upstream 202511 14090379 ~ 14093476 (-) True G63939
TU86291 lncRNA upstream 303820 14191688 ~ 14196509 (-) True G63947
TU86300 lncRNA upstream 338397 14226265 ~ 14227320 (-) True G63955
TU86309 lncRNA upstream 379537 14267405 ~ 14267758 (-) True G63963
XM_022671378.1 mRNA downstream 85711 13712234 ~ 13755482 (-) False LOC103038708
XM_022671377.1 mRNA downstream 85829 13712234 ~ 13755364 (-) False LOC103038708
XM_022671376.1 mRNA downstream 85829 13712234 ~ 13755364 (-) False LOC103038708
XM_022671375.1 mRNA downstream 85829 13712234 ~ 13755364 (-) True LOC103038708
XM_022671379.1 mRNA downstream 85839 13712234 ~ 13755354 (-) False LOC103038708
XM_022671385.1 mRNA upstream 34671 13922539 ~ 13997493 (-) True sfmbt2
XM_007234980.3 mRNA upstream 192421 14080289 ~ 14089552 (-) True kin
XM_022671174.1 mRNA upstream 1102478 14990346 ~ 14992730 (-) True LOC111192906
XM_022671391.1 mRNA upstream 1382995 15270863 ~ 15554632 (-) True snd1
XM_022671392.1 mRNA upstream 1691006 15578874 ~ 15624348 (-) False LOC103045938
TU85708 other downstream 1475454 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 3429962 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 4218405 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 5667391 8166678 ~ 8173802 (-) False LOC111192870
TU84254 other downstream 7103245 6735163 ~ 6737948 (-) True G62484
TU86395 other upstream 897453 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 1106296 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 2697197 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 2994467 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 2994467 16882335 ~ 16887903 (-) True G64492

Expression Profile