RNA id: TU86260


Basic Information

Item Value
RNA id TU86260
length 342
lncRNA type read_through
GC content 0.32
exon number 2
gene id gata3
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 14167229 ~ 14242234 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acatatacacacacacacacacacacacagagtacacacacacacaaacagtacaTACACTGAACACCTCTGTTCACCTGAAAGACTTTTCTTCCGGCCCAGGTTATAtgcattgtgaaaaaaaagttcctgtatttgttatttgtatgtATAATTCAGAGTACCAAAAATACGAAAGAAACAAAGATGTAGAATTATTTCTTTATGTAATGCAGACTGAATGGTTGTACAAATTTAATAATcactagtgtaaaaaaaaaaacaacagacttGCTTTTTTGTTGCgtaatttttttccctctttgaaaataataaactaGTTTAATCTCTGTTGAACATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86129 lncRNA upstream 411859 13754865 ~ 13755370 (+) True G63827
TU86106 lncRNA upstream 453789 13711909 ~ 13713440 (+) True G63813
TU86075 lncRNA upstream 489970 13573720 ~ 13677259 (+) True G63791
TU86005 lncRNA upstream 623718 13542613 ~ 13543511 (+) True G63755
TU86006 lncRNA upstream 625228 13541161 ~ 13542001 (+) True G63756
TU86326 lncRNA downstream 140649 14382882 ~ 14383150 (+) True G63978
TU86327 lncRNA downstream 190738 14432971 ~ 14433787 (+) True G63979
TU86340 lncRNA downstream 231793 14474026 ~ 14474399 (+) True G63992
TU86352 lncRNA downstream 425883 14668116 ~ 14731918 (+) True G64001
TU86382 lncRNA downstream 542676 14784909 ~ 14859165 (+) True G64022
XM_022671388.1 mRNA upstream 68683 14090332 ~ 14098546 (+) True atp5c1
XM_022671387.1 mRNA upstream 69747 14090332 ~ 14097482 (+) False atp5c1
XM_007234984.3 mRNA upstream 70914 14090332 ~ 14096315 (+) False atp5c1
XM_007234981.3 mRNA upstream 86116 14056785 ~ 14081113 (+) True itih2
XM_022671386.1 mRNA upstream 124427 14015116 ~ 14042802 (+) True itih5
XM_022671389.1 mRNA downstream 478799 14721032 ~ 14727355 (+) True LOC111192957
XM_022671390.1 mRNA downstream 480681 14722914 ~ 14727355 (+) False LOC111192957
XM_022671175.1 mRNA downstream 754885 14997118 ~ 15000582 (+) True fam200b
XM_007245020.3 mRNA downstream 1179768 15422001 ~ 15426787 (+) True LOC103045633
XM_022671152.1 mRNA downstream 1321784 15564017 ~ 15571205 (+) True LOC111192874
TU85654 other upstream 1005909 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 1507711 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 1698327 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 4517142 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 4726665 9433437 ~ 9440564 (+) False LOC111192948
TU86374 other downstream 502502 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 2180001 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 2196987 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 2510810 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 2591063 16833296 ~ 16864454 (+) False LOC103030423

Expression Profile