RNA id: XM_007234986.3


Basic Information

Item Value
RNA id XM_007234986.3
length 3369
RNA type mRNA
GC content 0.50
exon number 6
gene id gata3
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 14167229 ~ 14242234 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCGGCACCTCGATCTGTGTGTCACTTCACATCTAAAACCCATcacgagcacacacacacgcacacatacacacacttattctCATTCACGCGAACGCGCACGCACGCGCGCGCACGCCTGCatgaatccatccatccaccaaggcttcttcttcttcttcttttcacgTGCGAGTCCACCTTATCATCTTCCTCATAATCATCATCGCGCTCAGGTGATCGGAAGCGATGCGAGCTTTGAAGAGCCGTGTGGATTAACCCGCAAGCAGCCAGCAAACAGCCCGAGGAAGCACAAAGGACCTCTTCTTATTGCTAATATCACCGCTAATATTTTATTAGCGCGTGTTTGGTGCGAAAAAGGCCTGAGTGCATGAACGTTTGATTGAGAGActtaaaaagagacagagagagacagacataaagagagaaagatggacgTGGGTGCGGAACAGCCTCGTTGGATGAGCCACCACCACCCGGTCATCAACGGGAATCACCCCGAGTCACATCACCCCGGACTGGGACACTCCTACATGGACCCATCGCAGTACCCGCTTCCAGATGACATGgatgtattgtttaatattgacGGACAGGGCAACCACCCGTACTACGGGAACCGGGCCATACAGAGGTACCCACCTCCTCACAGTAGTCAGGTGTGTCGTCCATCCTTGCTGCACAGTTCCCTGCCATGGCTGGATGGCAGCAAAGGCATCGGCCCACACCACAGCGCCTCGCCGTGGATGGGGCCCTTCCCTAAGACCCCTCTGCACCACCATGGCTCTCCAGGAACACTGTCAGTCTACCCTCCagtgtcctcctcctcctcctcttcgtcCTCACTGTCAGCTGGACATGCCAGCCCGCACCTATTCACCTTCCCCCCAACCCCACCAAAGGACGTGTCCCCGGACCCGGCCATTTCTACCCCGGGCTCTGGCTCGTCCGTGGTACGACCAGAGGACAAAGAGTGCATTAAGTACCAGCTGCCCGAGAGCATGAAGCTGGACCCGGCCCATAGCCGGAGCATGGCCAGCATCGGCGCAGGGGCATCTGCAGCCCACCACCCCATCGCCACTTACCCTTCTTATGTGTCCGATTACGGGCCGGGCATCTTCCCACCAAGTAGCCTCATAGGTGGGTCCTCTTCTAGTTATGGTTCCAAAACAAGACCAAAAACGAGGTCCTGTTCAGAGGGCAGGGAGTGTGTAAACTGCGGGGCTACCTCCACTCCGCTATGGAGGCGCGACGGGACCGGACATTACCTCTGCAACGCGTGCGGACTGTACCACAAAATGAACGGCCAGAACAGACCTCTCATCAAACCCAAGAGGAGGCTGtctgcTGCAAGGCGAGCTGGTACTTCATGTGCTAACTGTCAAACGACCACCAcgacactgtggaggagaaaCGCGAACGGAGATCCAGTGTGTAACGCCTGCGGCCTCTACTACAAACTGCACAATATCAACCGGCCGCTCACCATGAAGAAGGAGGGCATCCAGACCCGGAACAGGAAGATGTCCAGCAAGTCCAAGAAGAGCAAAAAGTCCCAGGACAGCATGGAGGACTTCTCCAAGAGCCTGATGGAGAAGAGCAGCTCCTTCAGCCCGGCGGCGCTGTCGCGTCACATGACCTCCTTCCCGCCCTTCTCGCATTCCGGCCACATGCTGACCACGCCCACCCCCATGCACCCTTCCTCCAGCTTACCCTTCGCCCCGCACCACCCCTCCAGTATGGTCACCGCCATGGGCTAGGCCACTCCCACTGCTACCTCTAGACCACCCTGACCATGACCTTTGACCTCGGGCATGGCGAGCCTCTGAACCCCTTTGACCTTTGACCCTTGAGACCACCACCTCCCTTCTTCCCTTGACCCCTTCTTTTGGActtctgctctctctcctcGAGCCTGGCCCACAGAGGACTGCTGGAGACTTGTCTCAACCGTACTCAACTGACCTTGTTCACTCCCTCCCCTCCAGACTTTGCTTAAAGAACGCTTGACTCTTCGTCCGAGTTgcgagaagaagagagagaacggGCGAGAGCTACAGAGCGAAAGTGAGAAAGTGTGCAAGCGAGAAAGACCCTAAAACCCCAGCGTGTACAGAAGTCGCTCTTGTTCACTCGTTCGAGGACACTTTTGTAAAGGTGAAAGCATCGAcaagaaaacaggaaaaacaagcaaacaaacattgTTCTTTGTTCCTCTGTCAATGCAtcagtccatccatccactcattCATTTATCATCCATCCACTCATCTTCATCCTCCTATTTCTCCTCCTTTTCGTTTagaaatttattttcttttccatttGAGACAAGAACTCCCAGAGCGGTGAAAGACACAGAGGAGACGGACTCTTGCATATATTTGTACAAATTGTatgaaatacagtacatttaatgaAGACTTTTTAAAACGAGTTAAacgacaaaaaagagagagagacttatgAGATGACGGaatgaaaaaagacaaaaaaaataaaataaataaaattaagagaaaCGCCCTTGGGCAGCTAACGACGAGAAGGGTACGACGACGCAAACCTGGAGGAGAACACGGAGAAGACGGTGAAGAACGAgcgaagaaaggaagaaaggaagaagGCCGGGagtgtctctttctttttctctctttctttctctgtctggaaagatagagacagatagaaagagagagagagacatgaagGTAGAACTGTGGGGAACTCAGTTCAGGAAGCAGTGCAGGCTGTGGTGGGATGCCTGTTAGAAACAGTGTGTAATGCATTAATGCTAAAGGTGGTCCGAGGGTCTTTCTCAGACCACCAGCTACTCTTTTGGATGTGTTATAGGTCTTGGGCAATTGGTTTGTGTTCGCGCTCCAATACAtaccaacacatacacacacacacacacacacgcacatacacacaaacacacacatatatacacacacacacacgcacatacacacaacacacacacacacacacacacagaaatacacacatgtatacacatacactgacttactgacgtatacacacacacacagagtacacacacacacaaacagtacaTACACTGAACACCTCTGTTCACCTGAAAGACTTTTCTTCCGGCCCAGGTTATAtgcattgtgaaaaaaaagttcctgtatttgttatttgtatgtATAATTCAGAGTACCAAAAATACGAAAGAAACAAAGATGTAGAATTATTTCTTTATGTAATGCAGACTGAATGGTTGTACAAATTTAATAATcactagtgtaaaaaaaaaaacaacagacttGCTTTTTTGTTGCgtaatttttttccctctttgaaaataataaactaGTTTAATCTCTGTTGAACATCATA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86129 lncRNA upstream 464115 13754865 ~ 13755370 (+) True G63827
TU86106 lncRNA upstream 506045 13711909 ~ 13713440 (+) True G63813
TU86075 lncRNA upstream 542226 13573720 ~ 13677259 (+) True G63791
TU86005 lncRNA upstream 675974 13542613 ~ 13543511 (+) True G63755
TU86006 lncRNA upstream 677484 13541161 ~ 13542001 (+) True G63756
TU86326 lncRNA downstream 140648 14382882 ~ 14383150 (+) True G63978
TU86327 lncRNA downstream 190737 14432971 ~ 14433787 (+) True G63979
TU86340 lncRNA downstream 231792 14474026 ~ 14474399 (+) True G63992
TU86352 lncRNA downstream 425882 14668116 ~ 14731918 (+) True G64001
TU86382 lncRNA downstream 542675 14784909 ~ 14859165 (+) True G64022
XM_007234985.3 mRNA upstream 22939 14102939 ~ 14196546 (+) True taf3
XM_022671388.1 mRNA upstream 120939 14090332 ~ 14098546 (+) True atp5c1
XM_022671387.1 mRNA upstream 122003 14090332 ~ 14097482 (+) False atp5c1
XM_007234984.3 mRNA upstream 123170 14090332 ~ 14096315 (+) False atp5c1
XM_007234981.3 mRNA upstream 138372 14056785 ~ 14081113 (+) True itih2
XM_022671389.1 mRNA downstream 478798 14721032 ~ 14727355 (+) True LOC111192957
XM_022671390.1 mRNA downstream 480680 14722914 ~ 14727355 (+) False LOC111192957
XM_022671175.1 mRNA downstream 754884 14997118 ~ 15000582 (+) True fam200b
XM_007245020.3 mRNA downstream 1179767 15422001 ~ 15426787 (+) True LOC103045633
XM_022671152.1 mRNA downstream 1321783 15564017 ~ 15571205 (+) True LOC111192874
TU85654 other upstream 1058165 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 1559967 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 1750583 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 4569398 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 4778921 9433437 ~ 9440564 (+) False LOC111192948
TU86374 other downstream 502501 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 2180000 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 2196986 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 2510809 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 2591062 16833296 ~ 16864454 (+) False LOC103030423

Expression Profile