RNA id: TU86283


Basic Information

Item Value
RNA id TU86283
length 517
lncRNA type inter_gene
GC content 0.52
exon number 4
gene id G63939
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 14090379 ~ 14093476 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACCAATTCAGCTCCTACAAGGTAAAATTCCAGTGAGAGGCAGTAAGAGACAATAAAATAACAGGAGAAAGAAGCCGTACCTGTACAGCAGACCCCTCAGCTTGTCTCCCACATTCACCACCATCACCTCTTTGCCAGCACCGGAGAGCTTGGCGATTTCGTTCTTCATGGCTTTAGCCACGCTGCTGTGGATGGCACCGCACAGCCCACGATCAGACGACACGCCAATGAGCAAGTGCTTGTTCTTATCATCTGTAGCCTTTATGTCAGCCTTCTCATACAGCGACAGAGCACCAGTGCCATAGACACGAGCTGGCTTCAAGGCCCTCTCAGCCCTAGCATACTTGGCGGCGGCCACCATCTTCATGGACTTGGTGATCTTCTGGATGTTCTTGACGGACTTCAACCGAATGGTGATGTCCTTCAAGGTAGCCATGTTCCTGACCTGCCCACATTGTGGGAGGAACACCACCGCGCTGGCCCTGCAGAACATGTTCACTTCCAATGAAGGTCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86231 lncRNA downstream 98587 13991255 ~ 13991792 (-) True G63904
TU86219 lncRNA downstream 248140 13841476 ~ 13842239 (-) False prkcq
TU86167 lncRNA downstream 321328 13764764 ~ 13769051 (-) True G63852
TU86164 lncRNA downstream 330376 13758263 ~ 13760003 (-) True G63849
TU86134 lncRNA downstream 528285 13561359 ~ 13562094 (-) True G63830
TU86291 lncRNA upstream 98212 14191688 ~ 14196509 (-) True G63947
TU86300 lncRNA upstream 132789 14226265 ~ 14227320 (-) True G63955
TU86309 lncRNA upstream 173929 14267405 ~ 14267758 (-) True G63963
TU86341 lncRNA upstream 380549 14474025 ~ 14474408 (-) True G63993
TU86344 lncRNA upstream 394717 14488193 ~ 14488804 (-) True G63994
XM_007234980.3 mRNA downstream 827 14080289 ~ 14089552 (-) True kin
XM_022671385.1 mRNA downstream 92886 13922539 ~ 13997493 (-) True sfmbt2
XM_022671382.1 mRNA downstream 202511 13841193 ~ 13887868 (-) True prkcq
XM_022671383.1 mRNA downstream 220681 13841193 ~ 13869698 (-) False prkcq
XM_022671377.1 mRNA downstream 335015 13712234 ~ 13755364 (-) False LOC103038708
XM_022671174.1 mRNA upstream 896870 14990346 ~ 14992730 (-) True LOC111192906
XM_022671391.1 mRNA upstream 1177387 15270863 ~ 15554632 (-) True snd1
XM_022671392.1 mRNA upstream 1485398 15578874 ~ 15624348 (-) False LOC103045938
XM_007245021.3 mRNA upstream 1485398 15578874 ~ 15624348 (-) True LOC103045938
XM_022671393.1 mRNA upstream 1577830 15671306 ~ 15867795 (-) True LOC103027187
TU85708 other downstream 1724640 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 3679148 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 4467591 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 5916577 8166678 ~ 8173802 (-) False LOC111192870
TU84254 other downstream 7352431 6735163 ~ 6737948 (-) True G62484
TU86395 other upstream 691845 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 900688 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 2491589 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 2788859 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 2788859 16882335 ~ 16887903 (-) True G64492

Expression Profile