RNA id: TU86374


Basic Information

Item Value
RNA id TU86374
length 300
RNA type TUCP
GC content 0.61
exon number 2
gene id G64015
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 14744735 ~ 14745082 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccctgttaatgtcctcgtccctgttcccatgtccagtcctgtccagtctcctgtcccgtttcatgtccagtctcctgttcagtctccgtccaccgtccagttccctgtccagcctccgtcccctgttctgtctccgtccaccgtccagttccctgtccagcctccgtcccctgttctgtctccgtccaccgtccagttccctgtccagtccccgttccccgtccagtctccgtctcctgtcccgttccccgtccagtctccgtctcctgtttagttccccgttcagtctcccgtccagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86352 lncRNA upstream 12817 14668116 ~ 14731918 (+) True G64001
TU86340 lncRNA upstream 270336 14474026 ~ 14474399 (+) True G63992
TU86327 lncRNA upstream 310948 14432971 ~ 14433787 (+) True G63979
TU86326 lncRNA upstream 361585 14382882 ~ 14383150 (+) True G63978
TU86260 lncRNA upstream 502502 14167229 ~ 14242233 (+) False gata3
TU86382 lncRNA downstream 39827 14784909 ~ 14859165 (+) True G64022
TU86412 lncRNA downstream 207653 14952735 ~ 14956365 (+) False G64047
TU86432 lncRNA downstream 207653 14952735 ~ 14957462 (+) False G64047
TU86433 lncRNA downstream 207653 14952735 ~ 14955361 (+) True G64047
TU86419 lncRNA downstream 208749 14953831 ~ 14958268 (+) False G64047
XM_022671389.1 mRNA upstream 17380 14721032 ~ 14727355 (+) True LOC111192957
XM_022671390.1 mRNA upstream 17380 14722914 ~ 14727355 (+) False LOC111192957
XM_007234986.3 mRNA upstream 502501 14219485 ~ 14242234 (+) False gata3
XM_007234987.3 mRNA upstream 502501 14226439 ~ 14242234 (+) True gata3
XM_007234988.3 mRNA upstream 504313 14226436 ~ 14240422 (+) False gata3
XM_022671175.1 mRNA downstream 252036 14997118 ~ 15000582 (+) True fam200b
XM_007245020.3 mRNA downstream 676919 15422001 ~ 15426787 (+) True LOC103045633
XM_022671152.1 mRNA downstream 818935 15564017 ~ 15571205 (+) True LOC111192874
XM_022671394.1 mRNA downstream 1159260 15904342 ~ 15923062 (+) True ccdc87
XM_007245047.3 mRNA downstream 1159260 15904342 ~ 15923062 (+) False ccdc87
TU85654 other upstream 1583415 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 2085217 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 2275833 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 5094648 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 5304171 9433437 ~ 9440564 (+) False LOC111192948
TU86778 other downstream 1677152 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 1694138 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 2007961 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 2088214 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 2119436 16864518 ~ 16888195 (+) True LOC103030423

Expression Profile