RNA id: TU86433


Basic Information

Item Value
RNA id TU86433
length 843
lncRNA type inter_gene
GC content 0.53
exon number 5
gene id G64047
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 14952735 ~ 14958268 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tccgcctagcaacaccttagcaaccgcctagcaacaccttagcaaccgcctagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccacagataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaacaccctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaaccacttagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagaaaccacctagcaacaccttagcaaccaccccggataccatagcacaccttagcaacgcctagcaacaccctagcaaccacctagccaacacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaacaccttagcaaccaccccggataccattagcaacaccctagcaaccgcctagcaacaccctagcaaccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86382 lncRNA upstream 93570 14784909 ~ 14859165 (+) True G64022
TU86352 lncRNA upstream 220817 14668116 ~ 14731918 (+) True G64001
TU86340 lncRNA upstream 478336 14474026 ~ 14474399 (+) True G63992
TU86327 lncRNA upstream 518948 14432971 ~ 14433787 (+) True G63979
TU86326 lncRNA upstream 569585 14382882 ~ 14383150 (+) True G63978
TU86470 lncRNA downstream 35842 14991203 ~ 14992008 (+) True G64057
TU86480 lncRNA downstream 49651 15005012 ~ 15035836 (+) True G64067
TU86499 lncRNA downstream 101770 15057131 ~ 15057391 (+) True G64083
TU86503 lncRNA downstream 117178 15072539 ~ 15072799 (+) True G64086
TU86509 lncRNA downstream 135610 15090971 ~ 15091193 (+) True G64088
XM_022671389.1 mRNA upstream 225380 14721032 ~ 14727355 (+) True LOC111192957
XM_022671390.1 mRNA upstream 225380 14722914 ~ 14727355 (+) False LOC111192957
XM_007234986.3 mRNA upstream 710501 14219485 ~ 14242234 (+) False gata3
XM_022671175.1 mRNA downstream 41757 14997118 ~ 15000582 (+) True fam200b
XM_007245020.3 mRNA downstream 466640 15422001 ~ 15426787 (+) True LOC103045633
XM_022671152.1 mRNA downstream 608656 15564017 ~ 15571205 (+) True LOC111192874
XM_022671394.1 mRNA downstream 948981 15904342 ~ 15923062 (+) True ccdc87
XM_007245047.3 mRNA downstream 948981 15904342 ~ 15923062 (+) False ccdc87
TU86374 other upstream 207653 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 1791415 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 2293217 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 2483833 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 5302648 9646579 ~ 9650087 (+) True G63051
TU86778 other downstream 1466873 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 1483859 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 1797682 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 1877935 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 1909157 16864518 ~ 16888195 (+) True LOC103030423

Expression Profile