RNA id: TU86473


Basic Information

Item Value
RNA id TU86473
length 669
RNA type TUCP
GC content 0.58
exon number 1
gene id G64060
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 14994164 ~ 14994832 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaatgatgttatgtaataacaaaagtttgggagaaggaccacgcccgaactctacgttctaactccaccccgtatcaatcaaccgtcctataaatacctcccctaactaactacctctcgtgacgaaaaATTCGTAGCATTCGATTTGACGCACTCACCTGCCAGCATTTGCTCGCTCCCCATGGATCTCCAACTCACCGCCTCCGATGAGGACCTCTTCCCTCCCAGCCAGCCTGTCTCTGCTCCTGCTCCCTCTCGCCGGGCTCATCGCTTGAGGTCTGTCgtctccattccggctactcctggttctactcctggttctacccATTCTTCTTCCCGGGCTGGTCGTCCTCACCAACGCACCCCCAGATCTCAGCGCTCCCGTCGCTCTTCTCCTCCTTCCCCCACTCCTCCTGGTCGAGCTCGCCGCTCTGGGCGCCCGGCTTCCTTAGCCGGCCCCGCACCCCCTTCCCCGGCCGAGCCCCTCTCTTCTGGTAAATCCCAGCCTCCTCGCATGTCCGATTGGACTGTTGTTAAGTTACAGCGGGTTTTGAAGGACCGCGGCGTCCCTTTCCCCCGTTCTGCTCCCAAAGCGGAACTTTTTTCGCTCTATCTCTCCTCGTTGGGTGGAAAACAGCGCGCAGGAGCCGCACCGGCGTCGCGGTCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86471 lncRNA downstream 1492 14991090 ~ 14992672 (-) False LOC111192906
TU86468 lncRNA downstream 3282 14990229 ~ 14990882 (-) False LOC111192906
TU86464 lncRNA downstream 14207 14979722 ~ 14979957 (-) True G64054
TU86452 lncRNA downstream 36757 14953570 ~ 14957407 (-) True G64048
TU86456 lncRNA downstream 36757 14953570 ~ 14957407 (-) False G64048
TU86476 lncRNA upstream 4977 14999809 ~ 15000025 (-) True G64063
TU86477 lncRNA upstream 8837 15003669 ~ 15003877 (-) True G64064
TU86502 lncRNA upstream 63542 15058374 ~ 15059643 (-) True G64085
TU86593 lncRNA upstream 670344 15665176 ~ 15668027 (-) True G64156
TU86603 lncRNA upstream 783284 15778116 ~ 15817856 (-) False LOC103027187
XM_022671174.1 mRNA downstream 1434 14990346 ~ 14992730 (-) True LOC111192906
XM_007234980.3 mRNA downstream 904612 14080289 ~ 14089552 (-) True kin
XM_022671385.1 mRNA downstream 996671 13922539 ~ 13997493 (-) True sfmbt2
XM_022671382.1 mRNA downstream 1106296 13841193 ~ 13887868 (-) True prkcq
XM_022671383.1 mRNA downstream 1124466 13841193 ~ 13869698 (-) False prkcq
XM_022671391.1 mRNA upstream 276031 15270863 ~ 15554632 (-) True snd1
XM_022671392.1 mRNA upstream 584042 15578874 ~ 15624348 (-) False LOC103045938
XM_007245021.3 mRNA upstream 584042 15578874 ~ 15624348 (-) True LOC103045938
XM_022671393.1 mRNA upstream 676474 15671306 ~ 15867795 (-) True LOC103027187
XM_015604747.2 mRNA upstream 930714 15925546 ~ 15927271 (-) True akap14
TU86395 other downstream 208015 14785321 ~ 14786149 (-) True G64034
TU85708 other downstream 2628425 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 4582933 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 5371376 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 6820362 8166678 ~ 8173802 (-) False LOC111192870
TU86884 other upstream 1590233 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 1887503 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 1887503 16882335 ~ 16887903 (-) True G64492
TU87035 other upstream 1887503 16882335 ~ 16887903 (-) False G64492
TU87037 other upstream 1888499 16883331 ~ 16887903 (-) False G64492

Expression Profile